barSeed - Barley Seed Development Database

Probe CUST_20434_PI390587928

Source Contig U35_19160

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20434_PI390587928	Hv_44K_v2	TGTATGTCGTGTATCTTCCTGATGTGGAAAAGGATCTTCTGCTCGCCTTCGTTTTTTGCC	454	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.229	0.364	0.928	1.428	1.350	1.626
Raw	19.755	50.115	109.655	262.331	87.426	115.256

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66454.5	1604	2e-24	1049 - 1108	100	60 / 60	minus	None
MLOC	MLOC_66454.4	1780	2e-24	1227 - 1286	100	60 / 60	minus	None
MLOC	MLOC_66454.3	2614	2e-24	2047 - 2106	100	60 / 60	minus	None
MLOC	MLOC_66454.1	3071	2e-24	2504 - 2563	100	60 / 60	minus	None
JLOC1	JLOC1_43792.4	2686	8e-25	2073 - 2132	100	60 / 60	minus
JLOC1	JLOC1_43792.2	3084	8e-25	2471 - 2530	100	60 / 60	minus
JLOC1	JLOC1_43792.1	3101	8e-25	2488 - 2547	100	60 / 60	minus
Harvest21	ABC10461	923	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_19160	923	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (923 bp)

>U35_19160 923 Hv_44K_v2
ATAGTCTCGTAGCATATTTTGTGACACTGTAGAATGGGACTTTCTGAACTGGCCTGTGTG
CCGAGATTGGCTTCCTTGCTGCCTCTATCTCTGACCCCTTCTTCCACCCCCGCTCCGGCC
CTCGCCCTCCCATCTCCGGCGGCCACGGTGGCCGGCGGTGAGTGGGTGGGGGGCTCGGTT
CTTGTGCCATATGTATAGTTGTAGGACTTTCCTCCCCAATAAACCAGATCTGCGCCCTTC
TTTCTTGTTTGGGATCTTCGTTTTGGCCATGTTGGCTGGAATAAAGGTCACTGGAGCTTA
CCATGTGCCTGGATCTGAGGCCCTTCCCCAAGATAAAGGAGTGGAGGAGGGTTATGGCGT
GCTTGATTCAGTTTTCTTCTTCTTCCCGAGTATCTCTTGTCTTCATTGAGAAGAAAGAGA
GACAGAGGAGGTGAAGAATGCGTGGATCCGGCGTTGTATGTCGTGTATCTTCCTGATGTG
GAAAAGGATCTTCTGCTCGCCTTCGTTTTTTGCCGCCGCCGTGGTGGTGGATGAGGAAAA
GGGGAGGAGTAGAGAGATGGAAATAACGGAGGGGTGAGAGCTCACCATCGATGGTGCTTC
ACGCAGAACTACGACGCCCACGATTGGCAGCCGGCCTTCTTCGCTACGCCATCGATTCTT
CTGGTCGAAAGGCGGCCATGCTTATTCCTCCCGGCCTAGATGCCAAAGGGGAGGCAGGTC
AGTTTTTGTTCGGAGTACATGTCTTCCATCTCCGGTGAGCTTGGCTGCTGGAGGAGAAAC
CATGGAGATCCAAGTGGTTTCGTCCCCGGTGTTGGTGTGGTTGAATCCGACAAGAAGCTG
TCTCGGACCCGATCGCTTTTTTCATTCTATGTTNGGGGTCCTTTTTACAAAAGTCAGGGA
CTTTTCCGTAGTTTTTTTTTTCT

Homology of Contig U35_19160 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None