barSeed - Barley Seed Development Database

Probe CUST_20424_PI390587928

Source Contig U35_45430

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20424_PI390587928	Hv_44K_v2	TGATGATTGTTGTGGTGATTTCTAACTGGATGCCCCGTGTGAAACTGAAAAGGGAAAAAA	51	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.494	0.649	0.986	2.054	1.455	1.329
Raw	59.779	120.606	162.282	485.954	136.703	133.838

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62341.2	3711	7e-23	43 - 102	98	59 / 60	minus	ABC44303
MLOC	MLOC_62341.1	3845	7e-23	55 - 114	98	59 / 60	minus	ABC44303
MLOC	MLOC_62341.3	3593	7e-23	35 - 94	98	59 / 60	minus	ABC44303
MLOC	MLOC_62341.4	3737	7e-23	25 - 84	98	59 / 60	minus	ABC44303
JLOC1	JLOC1_40797.2	3681	4e-23	3534 - 3593	98	59 / 60	plus
JLOC1	JLOC1_40797.1	3928	4e-23	3781 - 3840	98	59 / 60	plus
Harvest21	ABC44303	379	3e-25	52 - 111	100	60 / 60	minus	ABC44303
Harvest35	U35_45430	379	3e-25	52 - 111	100	60 / 60	minus

Contig Sequence (379 bp)

>U35_45430 379 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGAAACTGGGGACAATGAGCGTCGCTGATGATTTTTTTTCCC
TTTTCAGTTTCACACGGGGCATCCAGTTAGAAATCACCACAACAATCATCAAGACTCAGT
TGCCACTTGCCAGCCTAAACCACAGTCAGAACCTGGCCGATGAATCAAACTGGAACATTC
TGCATTGGACACAATACACTTATATATTTATACACTTGTGCAAAAGTTCAGGGCACAAAT
GTTACCACTCCTACTACAGTCAGGACGAGCCGCCGCCGGAGGAGGAGCCCGGGTTCCCCT
GCTTGGACGACGAGGGGATGCCGGGGGACCTCGCGTTGGGCAGCTCCTTCACGACGTCGA
CCATGGACGGGCGCCGGGT

Homology of Contig U35_45430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None