barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_2041_PI390587928Hv_44K_v2GGTCAACTGCTGTAACTAGCTACAGATTCTAAACGAAGAAATCATATTCTCCCCAAAAAA683GeneList: darkslateblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6941.8861.1580.8010.3100.410
Raw 455.051811.552427.574487.03263.26790.302



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_14584.136739e-2253 - 10710055 / 55minus ABC14766
MLOCMLOC_14584.236649e-2253 - 10710055 / 55minus ABC14766
MLOCAK37461337403e-213687 - 374010054 / 54plus ABC14766
JLOC1JLOC1_9957.238125e-223618 - 367210055 / 55plus
JLOC1JLOC1_9957.136665e-223472 - 352610055 / 55plus
Harvest21ABC147667543e-2512 - 7110060 / 60minusABC14766
Harvest35U35_207477543e-25684 - 74310060 / 60plus



Contig Sequence (754 bp)

>U35_20747 754 Hv_44K_v2
TAGAAATTCCAGGGCACCGGCTCCTGCACATCAACGCATGCGAACCTACACCAAGGTGCA
CAAACGTGGTGCTGTAGGGAGATCTATCGACATGAACCGTTATTCAGGGTATGATGAACT
GAAGCATGACATTGCTCGGATGTTTGGTATCGAAGGGCAGCTTGGTGACCAAAGTAGAGT
TGGCTGGAAACTAGTATATGAAGATCATGAAAAGGATGTTCTACTAGTTGGTGATGACCC
ATGGGAGGATTTTCTGAACTGTGTACGGTGCATCAGGATTCTTTCTCCACAGGAAGAAAT
GCAAATGAGATTGGTTGGTGACTTTGGCGACGGCTTTCTACCCAACCAAGCTTGCAGCAG
CTCAGATGGGGGTCAACCTTGGTAACTGAGATCACATGTTTGAATGACCAATGTAGTTCC
AGGCGCTGCTGGACCAATATTTTTGTCGGCCAGTCCCATGAAAACGGATGCTGGTGATGA
TAGTTGACGATGATTTAGGCTCTGAAATTCCAAGGCCGAGTGAACATGAATATAAGGAAC
AATTCATACTTTTTTGTCTCTATTGTAGTCTTGTAGCTCTGATGTTTTGTTGGCCTTGCA
ATCTACATAGCCAACCCATATTTGCTGCTGCCATGTAGTATATGTCATTGTTGCCTGATG
TAACAGTTTGCCACATACTCAGAGGTCAACTGCTGTAACTAGCTACAGATTCTAAACGAA
GAAATCATATTCTCCCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_20747 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os08g40900.210563e-76protein|auxin response factor, putative, expressed
Brachypodium v1_2Bradi3g40437.210873e-82
Arabidopsis v10None