barSeed - Barley Seed Development Database

Probe CUST_20412_PI390587928

Source Contig U35_21484

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20412_PI390587928	Hv_44K_v2	GGTCAGAACTTGTATGTAGCACATGTTTTTGTAATTTGTCCTGCCCAATTATATTTGAGA	1433	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.808	2.150	1.170	0.813	0.398	0.413
Raw	1650.000	3110.246	1466.363	1610.799	272.908	312.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45023.1	611	2e-24	551 - 610	100	60 / 60	plus	ABC14333 ABC14334
JLOC1	JLOC1_29215.1	702	8e-25	558 - 617	100	60 / 60	plus
Harvest21	ABC14334	405	3e-25	321 - 380	100	60 / 60	plus	ABC14334
Harvest21	ABC14333	1521	8e-21	1435 - 1496	95	59 / 62	plus	ABC14333
Harvest35	U35_21484	1518	3e-25	1434 - 1493	100	60 / 60	plus

Contig Sequence (1518 bp)

>U35_21484 1518 Hv_44K_v2
GAGACAGATGATTGAGCATACAAAGAAGCTTGTTGAAGATAAATTCACAACAGTTGGAGG
CTATGAGCATAATGCAGAGGTGATTTATGGTGATACCGATTCTGTGATGGTACAGTTTGG
TGTTTCTACAGTCGAGGACGCAATGAAATTGGGAAGAGAAGCTGCAGAATATATTAGTGG
AACATTTATTAAGCCCATCAAGCTAGAGTTTGAGAAAGTATATTTCCCATACCTACTGAT
CAGCAAGAAGAGATATGCTGGTTTGTACTGGACAAATCCTGAGAAATTTGATAAAATGGA
CACAAAAGGTATTGAAACAGTTAGAAGGGACAACTGTTTATTGGTAAAGAACCTGGTGAC
TGAGTGCCTTCATAAAATACTAGTGGACCGAGATGTTCCTGGTGCTGTTCAATATGTCAA
GAATACCATATCTGATCTATTAATGAACCGTGTGGACTTGTCACTTCTAGTTATAACGAA
GGGTTTGACAAAAACAGGAGAAGACTACGCTGTAAAAGCTGCCCATGTGGAGCTTGCTGA
GAGGATGCGGAAGAGGGATGCTGCCACTGCACCAACTGTTGGCGACCGGGTTCCTTACGT
TATAATAAAAGCAGCAAAAGGGGCAAAGGCATATGAGAAGTCAGAGGATCCAATTTACGT
TCTGGATAATAACATTCCAATAGATCCTCAGTACTACCTTGAGAATCAAATTAGCAAACC
ACTGTTGAGAATATTTGAGCCAATTCTGAAGAACGCAAGCAGAGAACTGCTTCATGGAAG
TCATACCAGAGCTGTTTCAATCTCAACACCTTCAAACAGCGGGATAATGAAATTTGCAAA
GAAACAACTGACTTGCCTTGGATGCAAAGCAGTTATAAGTGGTCCTAACCAAACACTGTG
CTCACATTGCAAGGGAAGGGAAGCAGAGTTATACTGCAAAACAGTAGCAAATGTTTCTGA
TCTGGAGATGCTCTTTGGGAAGCTATGGACGCAATGCCAGGAGTGCCAAGGCTCCCTACA
CCAGGACGTTCTGTGCACCAGTCGGGACTGCCCTATTTTCTACCGGCGGAGGAAGGCACA
GAAGGACATGGCTGAAGCTAGGGTGCAGCTTGACCGCTGGGACTTCTGAGTCCTCTAAAT
GCTCTGAAAACTGGCAGCCTCCGCCAACTTGTGAGGGTGTAATTGCAAATGGCACGCTGC
TGCTAAGATCGCGTAAATGCATCATGATGCATGATGGGCCAGGGCTACGGTTGGAGATCG
GCAGTGTTTGCTCTGAGTTGGAATGGGGTTTGAGGTAGGCCCTTGTATGGTTCATGTGTG
TGTCTGCTTAGTTGGGTGGAGTATCAACCCTGCAAGACGGTTAATTGCTGCCTGCCTAAT
TGTGCCGGACTGCTGATGCGTAACTAGAAGTAGAACAACTCATCTTGTAACTTGGTCAGA
ACTTGTATGTAGCACATGTTTTTGTAATTTGTCCTGCCCAATTATATTTGAGAAAAGATT
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_21484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g08330.1	1106	protein\|POLD1 - Putative DNA polymerase delta catalytic subunit, expressed
Brachypodium v1_2	Bradi4g23600.2	1107
Arabidopsis v10	AT5G63960.2	1112	\| Symbols: EMB2780 \| DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases \| chr5:25599597-25606672 FORWARD LENGTH=1112