barSeed - Barley Seed Development Database

Probe CUST_2040_PI390587928

Source Contig U35_20748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2040_PI390587928	Hv_44K_v2	GAAAATCGCAGAGATAGCTCATTCTCACGGTGCTCTTGTTTTGGTGGACAACAGTATCAT	786	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.271	0.386	1.306	2.255	1.180	1.001
Raw	39.073	89.681	261.653	731.846	129.581	121.185

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360851	1570	2e-24	772 - 831	100	60 / 60	plus	None
MLOC	MLOC_71910.2	1105	2e-24	471 - 530	100	60 / 60	minus	None
MLOC	MLOC_71910.1	1490	2e-24	856 - 915	100	60 / 60	minus	None
JLOC1	JLOC1_47815.2	1824	8e-25	585 - 644	100	60 / 60	plus
JLOC1	JLOC1_47815.1	913	8e-25	585 - 644	100	60 / 60	plus
Harvest21	ABC14181	825	3e-25	762 - 821	100	60 / 60	plus
Harvest35	U35_20748	851	3e-25	787 - 846	100	60 / 60	plus

Contig Sequence (851 bp)

>U35_20748 851 Hv_44K_v2
TCGAGCACTGTTGGCCTTGATCAAACCAACTCCCGCTTCCCCACTCTCGCCGACCATGGC
CGCCGCCGTCGCCACCGCTGCCGCCCGCCTCTTCCTCCTCCACTCCAGCCCGCGCTCCTC
CCTCCCGTGCCCAAACCCTAGCCCCAGCTCCGCCCACACGCCCCGCCTCGCCTACCCGTG
CCTCGCGCTCTCCCACCGCATGGCGGCGGCCCCGGCGGCGATCGCCGGTCCCTCCGGCGA
CTCCGAGCGCGACCTCAGCGCGTCCGCGGTCTCCTTGGATGCGCCTGGGGCCGTAGAATC
CTCGGGAGATGGTCTGACGAGGAAGGAGCCGAGCGTGGCGACGATACTGACCAGCTTCGA
GAACTCGTTCGACAAGTACGGGGCTCTCAGCACGCCCCTGTACCAGACGGCCACCTTCAA
GCAGCCTTCAGCAACTGTTAATGGAGCTTATGATTATACTAGAAGTGGCAATCCTACTCG
TGATGTTCTCCAGAGCCTTATGGCCAAGCTCGAGAAGGCAGACCAAGCATTCTGCTTCAC
TAGTGGGATGGCAGCACTAGCTGCAGTAACACACCTACTTCAGTCTGGTCAAGAAATAGT
TGCTGGAGAGGACATATACGGTGGCTCTGATCGTCTGCTCTCACAAGTTGTCCCAAGAAA
TGGAATTGTAGTGAAACGAGTGGATACAACTAAAATTAACGATGTGGCTGCTGCAATTGG
ACCCTTGACTAAACTAGTTTGGCTTGAAAGTTCCACCAATCCCCGTCAACAAATTACTGA
TATAAAGAAAATCGCAGAGATAGCTCATTCTCACGGTGCTCTTGTTTTGGTGGACAACAG
TATCATGTCTC

Homology of Contig U35_20748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g07860.1	476	6e-111	protein\|cystathionine gamma-synthase, putative, expressed
Brachypodium v1_2	Bradi1g47910.1	478	9e-130
Arabidopsis v10	AT3G57050.1	464	2e-90	\| Symbols: CBL \| cystathionine beta-lyase \| chr3:21111939-21114521 REVERSE LENGTH=464