barSeed - Barley Seed Development Database

Probe CUST_20408_PI390587928

Source Contig U35_21489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20408_PI390587928	Hv_44K_v2	CTCATGAGATTGGAATTGTGCACTCGCATACATTAAGATGTGTTCCTTTCGTACAAAAAA	1050	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68919.1	1978	9e-22	1893 - 1947	100	55 / 55	plus	None
JLOC1	JLOC1_45647.1	1513	5e-22	31 - 85	100	55 / 55	minus
JLOC1	JLOC1_45646.1	1611	5e-22	1527 - 1581	100	55 / 55	plus
Harvest35	U35_21489	1120	3e-25	1051 - 1110	100	60 / 60	plus

Contig Sequence (1120 bp)

>U35_21489 1120 Hv_44K_v2
GGCGAATTGGGCCCTCCAAAAGATGCTCGAGCGGCCGCTAGATCCCATGTTATCGTGTTC
TTCTGAATCATTTGCTGCTGGAGAACAAGTTTATACAAAGTGGGGATTGACTTTCGCAAT
CATCCAGTTGAGTACGTTACGAATACCATCATTTTGTTTATTATATTCTTCACGATCCAT
GCGATAGAGGTTCAATTCAGACTTGAATGCCTCTTGATCTTCTGCGAGCAGTTCGTTATA
CGATTCCGCGTCTCGATCGCCTCTTATATGGGTTGGAACTGATGATCGCGGTCCTGTAAC
GACTTCTTCCTTTGCTTTATAGTCACCATAGGAAGGTCTCTTAGGCTTGGCGATTTGTAG
TGTCGTGAGCTGCTTTGGGTCGTCTAGACGACCTAGCTCGTAGGACCGTTCGGCGGTTGT
CTTCATGATGTAGGCTTATTCAAACGCGTCTCAATCGCTTGGGTCGTTAAGGAGATACAT
CTTGGGGTTTGCGTTCCATGACATTGTCTCGAGATGCATTTTATCGATTAGGTCTTCGTT
TTCGTAGTTACAACTGCCTTAAAGAAGTGCAGCTCTGAGACTCTTAATTGAGCGGCCGCT
ACCGGAAGCTCTGGTCGCAGAAGTTCGCGGACGCCATGGTGAAGATGGGCTACGCCGACG
TGCTCACCGGGCCGCCCGGGGAGATCAGGAAGGTCTGCAGCAGAGTGAACTAGCACTACT
GCCGAACCTCCCAAATTCAGACATCTGCACATGTGTACTCCGGCCACTGTACATGACATG
ATCACCATTCAACACATACATCTCACCTAGGTCACCCCGACGCGCCACCTGCATCGATCG
TTCATGGCTGTAAACCTGTGACATAGTACAAGGGTAGATCAGGTGTCACAATCTTGCAAA
TTCCATTGATTCGTTTTGTGGGGCTACTTTGGGTGCCTAGCTAAAGTCTGTCATGCATGC
GCACCCTGACAGGTACAGTACAACAGGTACAACAACATAGAGATCAACCGTGTCATGGAG
TTATTTTTTCGCTTCAGCATTATTTTGTCACTCATGAGATTGGAATTGTGCACTCGCATA
CATTAAGATGTGTTCCTTTCGTACAAAAAAAAAAAAAAAA

Homology of Contig U35_21489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None