barSeed - Barley Seed Development Database

Probe CUST_20406_PI390587928

Source Contig U35_19170

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20406_PI390587928	Hv_44K_v2	GCAATGGATCTAGACCATACTATGTACAACGTACAACTTTATCTCGGGCTGTGTAAGACT	989	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248907.1	1882	7e-23	1015 - 1074	98	59 / 60	plus	ABC13151
MLOC	AK354354	1841	7e-23	1096 - 1155	98	59 / 60	plus	ABC13151
MLOC	MLOC_80947.1	1307	3e-21	1251 - 1307	98	56 / 57	plus	None
JLOC1	JLOC1_53882.1	1340	4e-23	1088 - 1147	98	59 / 60	plus
Harvest35	U35_19170	1052	3e-25	990 - 1049	100	60 / 60	plus

Contig Sequence (1052 bp)

>U35_19170 1052 Hv_44K_v2
GGTGTTCCCCGTCCCCGACGGACTTCCCTCGGCTCGTCTGCTTCTTCTTCCTCCCTTCCT
CCCTTCATTGGATTGGAACTGGAATTGGAATCGGAATTGGATTGGCAGCCAAATCGAATC
GAATCCAATCCATCGATCGGGACGCCGCCGGCTAAGATCTCCGGCTCATTGCAACCAAGG
AAGGAAGGAAGGAAGGAGCGAGGTGTCGGCCTCGGCCTCGGCGGGCGGGGATGGCGTGGC
GGCTGGCCCTGCCGCTGCTCCTCTTCTACTCCCCCATCCTCATTTGCTCATCCTCATCGC
AAGAAATCCAAGACAATGATCCCTCCAAATTGTTTAAGAGTGCTTCCGAGATGATGAGCC
TCAGCAAATACGACGGAGCGCTTGGTCTGCTCAACGCTGTCCTGGAGCTCGACCCTAACC
ATTCCGAAGCTTACAGGCAGCGCGCGTCAGTGTTCCGCCACAGATGCAGACACAAGGAAG
CTGAGAGCGACTACAACAAATTCCTCGAGCTCAAGCCCGGGACTGCTTCAGTGGAAAAGG
AGCTAGCTCAGCTGCTGCAGGCTCAGAATGCATTACAATCTGCTTATACCCAGTCTGATG
CTGGGGAATTCTCAAAAGTCCTCGAGTACGTCAACAAAATCGTGCTCGTCTTTTCTCCAG
GTTGCTTAAAGGCAAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTGAAAGACTATTCAA
ATGTTATTTCGGAGACAGGATTTATTCTCAAGGAAGATGAAGATAACTTGGATGCGCTGT
TACTTCGTGGCCGAGCATACTATTACCTTGCTGACCATGATGTCGCCAACAGGCACTATC
AGAAAGGCCTCCGTCTAGACCCTGAACATTCAGAACTGAAGAAAGCATACTTTGGGTTGA
AAAAACTTCTGAAGAAGACCAAGAGCGCAGAAGATAATGCTGCCAAGAGCAAGTTTCGCG
TGGCTGTTGAAGACTACAAGGCAGCACTAGCAATGGATCTAGACCATACTATGTACAACG
TACAACTTTATCTCGGGCTGTGTAAGACTCTG

Homology of Contig U35_19170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74580.1	472	1e-114	protein\|dnaJ homolog subfamily C member, putative, expressed
Brachypodium v1_2	Bradi2g62730.1	468	5e-127
Arabidopsis v10	AT5G03160.1	482	1e-76	\| Symbols: ATP58IPK, P58IPK \| homolog of mamallian P58IPK \| chr5:750286-752671 FORWARD LENGTH=482