barSeed - Barley Seed Development Database

Probe CUST_20405_PI390587928

Source Contig U35_19171

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20405_PI390587928	Hv_44K_v2	TCATGCTGTAATACTGATTTCAGGAAACAGTTGTATCGAACATGTGAGAAAACAATGTTG	1391	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.060	1.630	1.544	1.123	0.318	0.302
Raw	60.585	145.739	118.173	136.337	13.636	13.651

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64033.1	3147	2e-24	3068 - 3127	100	60 / 60	plus	ABC12222
MLOC	MLOC_64033.2	3546	2e-24	3215 - 3274	100	60 / 60	plus	ABC12222
MLOC	MLOC_64033.3	3786	2e-24	3455 - 3514	100	60 / 60	plus	ABC12222
MLOC	MLOC_64033.4	3864	2e-24	3533 - 3592	100	60 / 60	plus	ABC12222
MLOC	MLOC_64033.5	3550	2e-24	3219 - 3278	100	60 / 60	plus	ABC12222
JLOC1	JLOC1_42005.5	3641	8e-25	3438 - 3497	100	60 / 60	plus
JLOC1	JLOC1_42005.4	3417	8e-25	3214 - 3273	100	60 / 60	plus
JLOC1	JLOC1_42005.3	3249	8e-25	3046 - 3105	100	60 / 60	plus
JLOC1	JLOC1_42005.2	3413	8e-25	3210 - 3269	100	60 / 60	plus
JLOC1	JLOC1_42005.1	3250	8e-25	3047 - 3106	100	60 / 60	plus
Harvest21	ABC12222	1480	3e-25	1392 - 1451	100	60 / 60	plus	ABC12222
Harvest35	U35_19171	1528	3e-25	1392 - 1451	100	60 / 60	plus

Contig Sequence (1528 bp)

>U35_19171 1528 Hv_44K_v2
GGCCACATTGATACATATGAATAAGGATGTTCGTCGTCTGTCATCATGCGGGTGGAAAGG
CAATACTGCACTGAAAATTAAGCTTCCCCGTCTTCGAACTCTAGTGTCAGTAGGAGCAAT
TTCATCCACGCCTGCCATGCCATTCTCGCTTTCATCAGAGTCCAACTACCTGACTGTCCT
CGAGCTACAGGACTCTGAAATCACTGAAGTGCCGGCATGGATAGGGACACTCTTCAATTT
ACGTTACATTGGCTTACGCCGCACCAAGGTCAGGTCACTCCCGGACTCTGTTGAGAAACT
ATCGAACCTGCAAACTCTGGACATCAAGCAAACTAACATAGAGACCCTACCAAAAGGGAT
TGTTAAGATCAAGAATCTACGGCACCTCTTGGCTGATAGATATGCTGATGAGAAGCAGTC
GGAGTTTCGATACTTTATCGGAATTCAAGCCCCAAAAGCACTGCCCAACATGGGAGAATT
GCAGACCCTTGAGACCATCCAAGCCAGCAAAGACTTGGCCGAGCAGCTGGAGAGAATGGT
GCAACTGCGAACTCTGTGGATTGACAACATAAGTTCTGCTGAATGCGCAAATATTTTTAC
CGCCCTATCAAACATGCCGCTTCTTTCCAGCCTGCTTCTTGCTGGAAGAGATGAGAATGA
GGCGCTTTGTTTCGAGTCCCTCCAGCCAATGTCCACACATCTCCACAAGCTGATCATCAG
AGGGAAATGGGCCAAGGGAACACTGAACTGCCCGATATTTCGCAGCCACGGAGAAAATCT
CAAGTATCTAGCTCTAAGCTGGTGTCACCTTTGGGAAGACGAGGATCCACTAGGGATGCT
TGCACCACACTTGCCGAACCTCACGTATCTGCGACTCAACAACATGCGTAGTGCAAACAT
TTTGGTTCTTTCTGCAGATTCCTTTCCTCACCTGAAGAGTCTTACACTAAAGCACATGCA
TAATGTCAACGAGCTAAAGATCATTGATGGCGCCCTTCCGTGCATCGAAGGTTTGTATGT
TGTGTCGTTGTCGAAGCTGGATAAGGTCCCTCAAGGCATTGAATCCCTTAGCTCCCTGAA
GAAGCTCTGGTTGGTGGGCTTGCATGGGGGCTTCAAAACTCAGTGGGACAAGAACGGAAT
GCAGCAGAAGATGGTGCATGTTCAGGAGGTTCGTGTCTGAAACTCTGAATGCGGCACAGT
GGTTCTTTCAGTTGTAGCATTCTGGTATGGTGCATCGACGCCATTCTAGCTTCAATCATT
CTGGTATGCTATAATTACTAAGCCATCATTTGCGAGTCTTGTACTTCCATATTGTGAGAC
GATTTCTGTTCAGAAAGTATTGGTGTCCATTGCCTTCAGGAGGCCCCGTACCTTTTTGTG
TTATTTCAGTTTCATGCTGTAATACTGATTTCAGGAAACAGTTGTATCGAACATGTGAGA
AAACAATGTTGTTAAATTTGTTTAAAAAAAAAAAAAAAAATTTAGCGGCCGCTCGAGCTT
GTATGAAAAGGGCCCAATTCGCCCTATA

Homology of Contig U35_19171 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g11990.1	858	0.0	protein\|NB-ARC domain containing protein, expressed
Brachypodium v1_2	Bradi4g21890.1	909	0.0
Arabidopsis v10	None