barSeed - Barley Seed Development Database

Probe CUST_20403_PI390587928

Source Contig U35_19172

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20403_PI390587928	Hv_44K_v2	AGAGTAAGTGGTCTTATATAGATGCAGGGCAGGGCGTTGTGACTGCATACAATCTTTTTT	432	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.399	2.927	2.209	0.952	0.092	0.015
Raw	4244.650	14623.057	9212.863	6389.409	227.105	31.335

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC10589	565	3e-25	433 - 492	100	60 / 60	plus	ABC10589
Harvest35	U35_19172	565	3e-25	433 - 492	100	60 / 60	plus

Contig Sequence (565 bp)

>U35_19172 565 Hv_44K_v2
GGCCTTGTGTTGGTTTAGAAAGGAGATCACACATACATACTACTGTAGTAGATATTACCT
GATCGATCGATATGGCGTGCTACCAGCTGGAGAATAGTGGCAGAAGACTGTCCAAGGTGT
TGATATGCATGTGGCTGCTGACGCTATTTGCCCGGTCATCTGGTGCAGAAGAGGTGGAAG
GCTGTGAGTTCAATCGGTGGAGCAAGACGTGGAGCAACAAGATATGCGTGGCGCGTGGAA
CTTGCAACACGCCGTGCAGAGCAGAGGGCTGGGAAAAGGGCGCCTGCTTCTTCATCAATC
ACTGCCTCTGCTACAAGAACTGCTCCCCGTCTCCGGCCCCGGTCTCGGCTAGCTAGTGAT
TCGTGTATGTACTCGCTATTGTGAGGCAAATTCATCTTGCCTTTGTTCAGCATGTATGTA
TGGCTTAAGACAAGAGTAAGTGGTCTTATATAGATGCAGGGCAGGGCGTTGTGACTGCAT
ACAATCTTTTTTTTGCATAATGAATAAAGTTGGGGCAGTATTCATCAACTAAAAAAAAAT
TACTGCNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_19172 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None