barSeed - Barley Seed Development Database

Probe CUST_20399_PI390587928

Source Contig U35_19176

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20399_PI390587928	Hv_44K_v2	ATGATCACTTGAAAGAGGTTGTTGGCAATGTCCGTGAAGCTATTTCCATCGTCAATGAGA	616	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9944.2	799	2e-24	658 - 717	100	60 / 60	plus	ABC16703
JLOC1	JLOC1_6466.3	740	8e-25	514 - 573	100	60 / 60	plus
Harvest21	ABC13557	645	3e-25	583 - 642	100	60 / 60	plus
Harvest35	U35_19176	679	3e-25	617 - 676	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_19176 679 Hv_44K_v2
GGGGGACCGGATCGGACCGCTTCCCCGCACACACGGGAAAGTAGCTGCTTTCTCTCTCTC
TCGTGCGGCGGCGGCGGCGTCCCGGCGGCCGGCGGCGCTCCAAGCAAGATGGACGCCACA
GCCCTTCAACATGAAAACCAGAAGCTGGTGCAGCAATTGGAAGCGCAGAAGTCTGAAATG
CATGTGTTGGAAGCTAAGTTCAAGGAGTTGAGGAATGAACAATCTTCTTACGACAACACT
CTGATTTCCCTGGATAAGACGTGGAATCAGCTTGTTGATGATTTAATCCTGCTTGGAGTT
AGATTTGGTGGCGGCTTGAACAATTTGCCTGCACTTGACCATGAAGAGTTGTCAGAAGAA
TCTATCGAGTCGTGTCCTTCCGAGGAGATTTTTCTCTTCATGCTCTTGAAGTCCAACAAT
TATGGAAAAAAGGATGACAGTAGCTTCTTGGAATTCGCTGAAGAAGCTCTTGCTTTGCGC
CGTTCGGCAACTCTTGCTCTGATGAGGTCCCTTCAAGAGGCTATTGCTGCACAACAGGCT
AGAAGTGAACATTTGTCATTAGCTTTAAATGGAGAGAAGTCAAATGAAGATGTTGTTGTT
GCCCTTCGAAACCATAATGATCACTTGAAAGAGGTTGTTGGCAATGTCCGTGAAGCTATT
TCCATCGTCAATGAGAAGC

Homology of Contig U35_19176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g41590.1	845	6e-61	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi2g33230.1	845	5e-67
Arabidopsis v10	None