barSeed - Barley Seed Development Database

Probe CUST_20392_PI390587928

Source Contig U35_45444

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20392_PI390587928	Hv_44K_v2	CTACGAACCTTGGGGTTTTTTGAATGCAGTCGTTAAATATATTCTGTGGTTTGATCGTAA	15	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.078	5.868	1.577	0.709	0.363	0.324
Raw	132.039	186.753	41.258	30.172	3.278	3.322

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC44342	638	3e-25	16 - 75	100	60 / 60	minus	ABC44342
Harvest35	U35_45444	638	3e-25	16 - 75	100	60 / 60	minus

Contig Sequence (638 bp)

>U35_45444 638 Hv_44K_v2
TTTTTTTTTTTTTTTTTACGATCAAACCACAGAATATATTTAACGACTGCATTCAAAAAA
CCCCAAGGTTCGTAGACACATGTCCATCACCACATATCATATACTACTACTAGTTTGCAA
TAATAGCTGCCCTCGATGATCATTTCTAGCACAAGAATCGACATGTTCAAATGAATGTAC
CAAGGGGAACCACGGCTGATGGTCGCACTCAACCTAATATATTGTTCCGTCTCATGCCAT
TCTGGAGATCGAGCAACCTCCTCCGAAGTGACTTCCTCTGCTTGATGTGAAGCAGCTTGT
CATAGACACACCATGGAAAGCTGATGAGATGTGGCCGCTCATATATTTTGTTGTAACAGC
CATAGTACTCCGGGTGATAGGTAACATGATACCAAGCGGACGCCTTGGCGTACGATGCTT
CATGAACATCCCCGCTCTCATCGGCGCTCATATCGCTGAACCATGACCTTGCTTCCTTCC
GCAAAGATTTCACCGCCAGTCTGATAGCATCGGCGTCACTGCTCTTGGTAAAATTCTTTG
CCATCTTAAGAATGCATCCGCTTATTATCTCAGCCTCACTTTTTATTCCGTAGTGCTCCA
TCAGATTACCCAACTTGAAGTCATACTCTCCCTTGAAC

Homology of Contig U35_45444 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50330.1	741	1e-64	protein\|RNA-dependent RNA polymerase, putative, expressed
Brachypodium v1_2	Bradi3g59910.1	987	2e-68
Arabidopsis v10	None