barSeed - Barley Seed Development Database

Probe CUST_20391_PI390587928

Source Contig U35_45445

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20391_PI390587928	Hv_44K_v2	GTGAGATTTGCTGTAAGCCTATACAAATGCATTGGGTTCACTAGTAATGATATGCAATTA	24	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59407.2	2550	2e-24	2323 - 2382	100	60 / 60	plus	ABC02779 ABC02780 ABC44343
Harvest21	ABC44343	627	3e-25	25 - 84	100	60 / 60	minus	ABC44343
Harvest35	U35_45445	627	3e-25	25 - 84	100	60 / 60	minus

Contig Sequence (627 bp)

>U35_45445 627 Hv_44K_v2
TTTTTTTTTTTTTTTTAGCATGTATAATTGCATATCATTACTAGTGAACCCAATGCATTT
GTATAGGCTTACAGCAAATCTCACACTTCTCCAGCGATAGCCCACTTCCACTTACAAAAA
ATGTTCATACGTGTAACAGTAGGTGCAACTCTTCTGTGCCCACTTCCACAGCGATAGCAG
CAATCATTAACAATATTTGTACGTAAACATATTTATTTCCAACATCTGTTCACTGGGAGC
AGATGAGCCTGAATATTCGTATTACTGTGTCATCCTCTCCCTACTTCACAACCAGAAAAT
AAGGAATGCATGTTACCCGAAAACACAGGAACCAGAATGTGATACATGAGGATGTCAGAA
TCACCTTGTTCCATCTCTGGTTTAAGCACTAAAACCCTTGTGTGTGGCACTCCACGGGTT
GGTTGGGAAGCTCGTGCACGCCTGAGCAGCAACCTTTGCCATCGCTTCAGGAACAATGCC
GGCATTACACATGTTTGCAAAGGACCGCATGTGCTTCATTCCATACTGCGCCAACGAGCC
ACATTGGGATTCAAAAGTACGCACCGTAGACTTGAGACAACTCCAGTCATCCACAAGAGG
CTCACCAGCTGGGCGAACAGTCTTTAG

Homology of Contig U35_45445 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None