barSeed - Barley Seed Development Database

Probe CUST_20375_PI390587928

Source Contig U35_19182

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20375_PI390587928	Hv_44K_v2	TTGTACCGGAGTTATGCAGGCTTCTTGTAAGGTTTTCAGGCTTGTAAAAGTAGTATTGGC	915	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.816	2.363	1.235	0.735	0.254	0.232
Raw	180.383	383.334	165.876	163.877	19.099	18.531

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374519	1027	2e-24	936 - 995	100	60 / 60	plus	ABC25806
MLOC	MLOC_8139.1	752	2e-24	525 - 584	100	60 / 60	plus	ABC25806
JLOC1	JLOC1_5392.1	765	8e-25	524 - 583	100	60 / 60	plus
Harvest35	U35_19182	987	3e-25	916 - 975	100	60 / 60	plus
Harvest35	U35_33819	233	1e-24	140 - 198	100	59 / 59	plus

Contig Sequence (987 bp)

>U35_19182 987 Hv_44K_v2
CGCGCTGCGAGCCGAGGCGGAGGAGCGGAGTTGAGGCAGACGTCGCCGGACTGCGATGAC
ACCGGCCGCCGACGCCGTCATCATCGCCGTAGCAGAAGCTAGCCGGAGCGAGCAGTCCAG
GAGCGGCAGCCGGAGAGCGGCGGCGGAGGCGCCGTCCGTCCCGTCGTCCTACGTCGTGTG
GGAGAAGGAGCGGTAACTGGTTCGTCAGAGCGGTCGGGAGGGGCGAGCATGGAGGTGGAG
GCGGCGAGGTGCGAGTGCTGCGGCTTCACGGAGGAGTGCACGCCGGAGTACATCGCGGCG
GTGCGGGCCGAGTACCTGGGCCGCTGGGTCTGCGGGCTCTGCGCGGCGGCCGTGGGCGAC
GAGGTCCGCCGCGCGGGCGCCGGCGGGCAGCGCGCGATCACCACGGCCGAGGCGCTCGAC
CGGCACGGCGCGTTCGCGCGGGAGGCGCCGCGGGCGCCCGGGAAGAAGGCGGCCGAGGAG
CTCGTGGCCGCCGTGTCGCGCCTGCTCAGGCGATGCCTCGACTCGCCGCCGGCGTCGCCC
GCCGCGCCGCAGGCGCGCAAGGTCGCCGCGGGGACGCGGTGCACGGTCGACGCCGAGGAC
GCCTGATTGATCAAGCTAAGCCTTGTGGCGGTTGCTGCTGTTGCCAATGATTGGGCAACG
CCGTCAAGAATAATGCTTCGGGGGCATGGCATGTTGCCTGCCGTCGCGAAGAATGAATAA
TTTGCGTCCTGGCTGATGATTGCTCGAGACAGGAGCGGTCGAGCTCCGTATGATCGAGCA
TGAAGTTATTACGTAATGCGCTGGTGTACGTACCATTTTTTGTTATTGAAGAAACTATAG
TACTTATTCGATTGTGTTGAGTATTATATTAGCTGAGGCTTCGGCTACGCATTGTAGCCG
CTCTGTACAAAAGCATTGTACCGGAGTTATGCAGGCTTCTTGTAAGGTTTTCAGGCTTGT
AAAAGTAGTATTGGCTTAATTATTTGT

Homology of Contig U35_19182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None