barSeed - Barley Seed Development Database

Probe CUST_2036_PI390587928

Source Contig U35_18430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2036_PI390587928	Hv_44K_v2	TTGGCATTTGGACGCGTGTGCTCTGTTAGGCTGCTACAAAAAGCCTACAACTTACAGAAA	907	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.593	1.592	1.046	0.850	0.500	0.451
Raw	2711.323	4295.557	2457.417	3186.462	643.525	632.184

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250424.1	991	2e-24	918 - 977	100	60 / 60	plus	ABC09224 ABC31620
MLOC	MLOC_54796.4	874	2e-24	708 - 767	100	60 / 60	plus	ABC09224 ABC31620
MLOC	MLOC_54796.3	1052	2e-24	979 - 1038	100	60 / 60	plus	ABC09224 ABC31620
JLOC1	JLOC1_35293.1	832	8e-25	683 - 742	100	60 / 60	plus
Harvest21	ABC09224	1000	3e-25	908 - 967	100	60 / 60	plus	ABC09224
Harvest35	U35_18430	990	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_18430 990 Hv_44K_v2
TGTCGCCCCGCCCCCGCCCCCGCCCCATCCATCCGCGCCTCCAAATAAAGTAAGCGCGGC
CACCCGCACCACCGAATCCTCCTCCGCCTCGCAATCCGCCCTCGCCCTGCCGCCACCGCC
GCCCCTCCCCGCGACCGCCCAGCCCTTCCTCTTCGCGGAGGAAGAGGGAGCACGCCGCGC
GCGGCCGCCATGGGGTTCTGGGAGGCCTTCCTCAACTGGCTCCGCAGCCTCTTTTTCAAG
CAAGAAATGGAGCTTTCATTGATTGGCCTCCAAAATGCGGGGAAAACTTCGCTTGTGAAT
GTCATTGCTACAGGAGGTTTTAGCGAGGACATGATTCCCACAGTAGGATTCAATATGAGA
AAGGTAACCAAAGGAAATGTCACAATAAAATTGTGGGATCTTGGAGGCCAGCCAAGATTC
CGGAGCATGTGGGAGAGATACTGCCGTGCTGTTTCTGCAATTGTGTATGTTGTTGATGCA
GCAGATCGGGAGAACATGGCTATTGCCAAAAGTGAGCTCCATGACCTTCTGAGCAAGCCA
TCTTTGACTGGTATCCCATTACTAGTCATTGGCAACAAAATTGACAAACCTGAAGCTTTC
CCCAAACAAAGTTTCACAGAAGTGATGGGTCTGAAGGCAATGACCGATCGAGAAGTGGCC
TGCTTCATGATATCGTGCAAGAACTCAACCAACATAGATTCAGTCATCGACTGGCTCGTG
AAGCACTCAAAGAAGAAGAATTGATCCAGATTGGTTGCCTTTGAAGTGCTCCAGATTCTC
TCTCTGTTTTTTGCACGTTACGTAGCATTGGGGCTGTAAATTATGTGAGAGGTCTTAATC
AGGAAGGTTATGTGTTCATAATTGATAATTGTGTAACCTGTTTTAGCAATCTGTGGGTTG
ACTGCATTTGGCATTTGGACGCGTGTGCTCTGTTAGGCTGCTACAAAAAGCCTACAACTT
ACAGAAAGCTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_18430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g10370.1	185	5e-128	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g71170.1	185	6e-128
Arabidopsis v10	AT3G49870.1	184	4e-111	\| Symbols: ATARLA1C, ARLA1C \| ADP-ribosylation factor-like A1C \| chr3:18492674-18494021 REVERSE LENGTH=184