barSeed - Barley Seed Development Database

Probe CUST_20359_PI390587928

Source Contig U35_19191

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20359_PI390587928	Hv_44K_v2	GCCTCGTTCATACGTTCTTCATCTATGTGGACCATTCGTGTTTTTCTCTATTTCTAAAAA	961	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.975	3.713	1.088	0.760	0.325	0.297
Raw	129.901	109.887	33.371	40.923	4.283	4.854

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_51386.1	1416	4e-23	1288 - 1344	100	57 / 57	plus
Harvest35	U35_19191	1033	3e-25	962 - 1021	100	60 / 60	plus

Contig Sequence (1033 bp)

>U35_19191 1033 Hv_44K_v2
GTAGCTCGCGCGGGCAACCGAAACCTTTCCTTATTCTTGCAAGGTCTCGGAAACGGAAAG
CCCCCTGCTCCGCTGCGCGTTTGCGGGTTTGGGAAGGAGCTCGGCCGGAAGGGGAAACGG
GCGACGACATGGGGCGTGGGCGCAGCGAGATAAAGAGGATCGACAACCCCACGCAGCGCC
AGTCCACCTTCTACAAGCGCAGGGACGGCCTCTTCAAGAAAGCCCGGGAGCTCGCCGTCC
TCTGCGACGCCGACCTCCTCCTCCTCCTCTTCTCCGCCTCCGGCAAGCTCTACCAGTACC
TCGCGCCCACCGCCCCCTCTGTCAAGGAGTTCGTCGAGAGGTACGAGGCCGCGACGCACA
CCAAGGTTTGGTCCGACATCCGCCAGGAGAGGCGCGCCGAGCTGGAGAAGGTGGCCAAGA
TGTGCGACCTCTTGGAGAAGGAGCTGAGGTTCATGACGGTGGACGACGGGGAGCAGTACA
CGGTGCCGTCGCTGGCGGCGCTGGAGCACAACCTGGAGGCGGCCATGCACAAGGTGCGCT
CCGAGAAGGACCGCAAGATCGGGGGCGAGATGACCTACCTCGAGAACATGATCAGGGGGA
AACAAGCGGAGCGCTACGGCCTGTGTGACAAGCTTGCTCATGCTCAGAGCCTCAAGGTCG
CGGAAGGAGGGTCCACCTCGCTGAACAACGGCCTGGACCTCAAACTTGGATTCAACTAGG
AACGGATGAAAGCTTCTGGCCGTGTGGGGTTCTGCTCTAGTGTTGCTTTGAGCTCCAGTG
TTATGTCAGTTTGAAATATGCTGCAATTGCCTTCTCAGGGATTGTAAACTTGTAAGAGAC
GACTGTCTTATGCGATGTTTGGTTTAGGCTGGGCTGGACTGGACTGGGTTTGTACCTCGA
ATAGGTGGAATGTGATACCAGTCCAGTATATTGCAATAACGTAGTTAACGGTCACCTCAC
GGCCTCGTTCATACGTTCTTCATCTATGTGGACCATTCGTGTTTTTCTCTATTTCTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_19191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52680.1	197	1e-107	protein\|OsMADS32 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi2g48690.1	197	2e-116
Arabidopsis v10	None