barSeed - Barley Seed Development Database

Probe CUST_20355_PI390587928

Source Contig U35_19194

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20355_PI390587928	Hv_44K_v2	ACGCATCTTGTCTTGTACCTGTAGTACGTATCTCTTGTGTGGAGGTGAATGAAATTTTTT	1190	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.729	3.081	0.931	0.949	0.459	0.873
Raw	57.472	108.753	27.107	46.291	6.764	15.557

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69867.1	3443	2e-24	281 - 340	100	60 / 60	minus	ABC23511
MLOC	MLOC_69867.2	2699	2e-24	10 - 69	100	60 / 60	minus	ABC23511
JLOC1	JLOC1_46322.2	2741	8e-25	377 - 436	100	60 / 60	minus
JLOC1	JLOC1_46323.1	2830	8e-25	2388 - 2447	100	60 / 60	plus
JLOC1	JLOC1_46322.1	3233	8e-25	384 - 443	100	60 / 60	minus
Harvest21	ABC23511	807	3e-25	712 - 771	100	60 / 60	plus	ABC23511
Harvest35	U35_19194	1299	3e-25	1191 - 1250	100	60 / 60	plus

Contig Sequence (1299 bp)

>U35_19194 1299 Hv_44K_v2
CAAGCTCCTGCTCCGCCGCCGCACGGCCGCCATGGCGGCCCTCGACGCGGGCCTCCCAGC
GGAGGCTGTCCGCCATTTCTCCAAGATACTCGAGGCACGCCGTGGCGTGCTCCCGCACAC
CTTCGCCGCCGCGTGCCTCGTCGGCCGTGCCGCCTCGTTCCAGGCCGGCGGGCGCCCAGC
AGACGCCATAGCAGATTGCAACCGTGCGCTGGCTCTCGACCCTGCGTACATCCCGGCGCT
CCGCGCCCGTGCCGACCTTCTTCAGTCCGTGGGGGCGCTCAGCGATTCCCTTCGTGACCT
TGACCACCTCAAACTTCTGTACGACGCGGCGCTCCGTGACGGCAAGCTGCCGGGGCCTAG
GTGGCGACCGCAGGGTGGTGTGCGCTACCGCGAGATCGCCGGCGCTCACCGCAAGTTGAT
CGCCCGGATTCAGGGGCTACGCAGCCGCGCCGCCGTCGGCGAGGGGTGTAACATCGACTA
CTACGCTCTACTGGGCGTGCGGCGCGGGTGCACGCGCTCTGAGCTGGAGCGCGCGCACTT
GCTGCTCTCGCTAAAGCTCAAGCCTGACCGCGCCGTGGTGTTCGGCGAGCGGCTGGAGCT
GGTGGACGAGCACCGCGACCTGGAGGCGGTGCGCGACCAGGCGCGCATGTCCGCTCTGCT
CTTGTACAGGATGCTGCAGAAGGGGTACTCGTTCATCATGTCGGCCGTGATCGACGAGGA
GGCTGCCGCTAGGCAGAGAGCGAGAGAAGCCGCGACAGCGTTGTCCAAGCAACAACAACA
AGCGGCGCCGATGCCGGAGAATCCTCCCGCCGTAAACAGCTCGACCGCGAGGACGACGGT
GAAACCTAAGGCAAAGGCTGCTGCGGGCGTTGCAACACTGTCGTCCCAGGCGGCAGCTCC
GGTGTACCAAGGGGTGTTCTGCCGCGACCTGGCGGTGGTGGGCACCCTGCTGTCCCGCAG
CGGGTTCGACCGCTCCCTCCCGGTGAAATGCGAGGCGATGAGCTGCTGATGGGGATGGGT
TCCGGGCAGCAGGTGCGATCTGATGCGGTGCGGAGGCGGACGGATCACCGGTCGGGACAC
AGGATGCCGGACTGGAAGCTGGCGGGAAAAAGCAGGGGGCGTTTGAATTTATTCGATGGA
ACTCGCTATTGTACAGTTTTGTGGTTCTGGGAGGAGAAAAAAAGAGAGCGACGCATCTTG
TCTTGTACCTGTAGTACGTATCTCTTGTGTGGAGGTGAATGAAATTTTTTTGGTTGCGTC
TCGTTGAGTGCGAGTTGTTCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_19194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g49000.1	604	1e-137	protein\|DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi1g64660.1	613	1e-158
Arabidopsis v10	AT4G02100.1	546	1e-81	Heat shock protein DnaJ with tetratricopeptide repeat \| chr4:930228-932049 FORWARD LENGTH=546