barSeed - Barley Seed Development Database

Probe CUST_20348_PI390587928

Source Contig U35_6686

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20348_PI390587928	Hv_44K_v2	CGGTAGCAACTTGAAGAAGATTTGACTTAAAGTAGTACAGTAGCAGTAAGTTTATGCTAA	1090	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.893	5.666	1.094	0.722	0.478	0.379
Raw	117.978	231.113	36.655	42.351	7.131	7.558

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14556.2	1362	2e-24	1174 - 1233	100	60 / 60	plus	ABC15726
MLOC	MLOC_14556.1	1569	2e-24	163 - 222	100	60 / 60	minus	ABC15726
JLOC1	JLOC1_9938.1	1546	8e-25	143 - 202	100	60 / 60	minus
Harvest21	ABC15726	1240	3e-25	1091 - 1150	100	60 / 60	plus	ABC15726
Harvest35	U35_6686	1240	3e-25	1091 - 1150	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_6686 1240 Hv_44K_v2
CCCGGGCTGCAGGCTTCACTTACTGCTCCAGTCCAGTTCACTTTGCTTCTCCAGTCCCCA
AGCACAACCACCACCCGGCCTACGTGCTCCTCGGCGATCAATGGACTGGGCACCGGACCA
GAAGGCTCTCGGGGGCCTCGGCCTCGCCGGCGTCTGCCGCGAGACCTGCCGCGTCATCCA
CCGCGTCATGCTCCCCAACTTCGTCCACCTGGGTCCCCCGCTGCTCTCCGCCGCGCTCTT
GCTCGCCAACTCCGCCGCCGTCCGCGCCCTCTCCGACCTCGACCACTGCCCCAGCCTCCT
CGCAGACCGGCTCGCCTTCTCCCTCTTCGCGACCGTCTCCGTCGGGGCCGGCCTCCTGCT
CCTGCTCCTCTGCGCCGCCGCCTACGCCTTCTGCGTCGCCTCCCTCTACAGCACCGGAGG
CGACCTCCTCGCCGCCGATCGCGTCCTCAGGGGGTTCCCCACGGCCCCGCTCGCGCGGCT
CGCCTGCACGTTCCTCATCCTCGCCGCGGCCCCCTTTCTCCTCGTTCACGCCTCCCTCTC
CTTCGCCGCCTTGTTCCATCCCCAGGAGCTGGTCAGCGCTCCGGGCAAGACCGTGCTGCC
GGTGCGGCTGCTGGCATGGGCCGCGTGCCTCGCCGGCGCGGGGTACGTCGCCGTGGTGTG
CCAGCTGGCCTGCGTGGTGTCCCTGCTCGAGGACGCCGTGCTCCTCGGCGCCCTGCGCAA
GAGCCGCGCGCTCCTCGCCGGCAAGTTCTGGGCGGCCGCCGGCGTATTCGTCACGCTCGA
CGGATGCATCTTCGCCGTGCTGGTGGCCTTCCAGGCTCTGGTGGTGGACGACGCGCTGGG
CCTCGGCCTCGGGTTCCAGGTGGCCGCCGGGGTGGTGATGGCGGTGGCTCTTTGCGCGGT
GGTGCTCTTGACGCTGGTGGCGCAGCCGGTGGTCTACATGGTGTGCAAGAACCACCACTA
CCAGGTCGTCCACAAGGTCCACCTCGACTGACGGGCGTTGAGCTGCTGCAGCCCGTCGAG
ACGGACCAGGTTCCAGCGACTCTGCCTGTGCCTAGCTATAGGCTATAGCTGCATCCTGTC
CACGACTCCACGGTAGCAACTTGAAGAAGATTTGACTTAAAGTAGTACAGTAGCAGTAAG
TTTATGCTAAATCATATCTAGTTGTGTACATCTAAATTTTATATTATCGATCTTATATTA
AGATTCATATGGATTTTTTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_6686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None