- Probe CUST_20346_PI390587928
- Source Contig U35_6688
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20346_PI390587928 | Hv_44K_v2 | TTGTTCAAAGAGATTTGGGTGTGCTTTGTAAGTTTGATCCTAATGGTCCAAAGGATAATA | 510 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.051 | 0.651 | 1.483 | 1.260 | 2.356 |
| Raw | 32.958 | 1041.610 | 12078.387 | 40724.467 | 12411.280 | 25918.733 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52505.2 | 850 | 2e-24 | 46 - 105 | 100 | 60 / 60 | minus | ABC14913 |
| JLOC1 | JLOC1_33653.1 | 609 | 8e-25 | 7 - 66 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC14913 | 602 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus | ABC14913 |
| Harvest35 | U35_6688 | 602 | 3e-25 | 511 - 570 | 100 | 60 / 60 | plus |
Contig Sequence (602 bp)
>U35_6688 602 Hv_44K_v2 TATAGCACAAGTATACCTTGAAGGTTCTTGTCTAGAAACTAGTGAGTGACTAGAGATGTC ACTCTTATCACCACCACCACCACCACAACCACCATTGTTGGTCACACCATATGGATCAAG AGGAGGCGGTTATTCATCAGTTTCTATTGATCCTTACGTACCATTGATCGTGACTTTGAT CATCATTGCAGTCCTCATGGTTGCCTCTTTGGTTTTTGCAAATTTATGTGTTAAGCGTTG GGCATTCTTCAACAGTTCATATGGTACACAGTCATTCGCGAAGCAAGAATGTGGCACGTG CACTCGTGAGGGCACCATTGATGTTGCTTATCCTATGAAGAAGGGTAATGTGGAGGATGT GGGGTTAGAGGAGTTGGTGGAATCAGATCCACCACAAAATGATGAGGATGACGAGGATAG TTCTTCCGAAGAAGGTTTTTAAAACATCAATCAATCTATGTTTTACTTATCTAGAAGTTT CTAGATATTATGTTATGTTCCTTCTATGTTTTGTTCAAAGAGATTTGGGTGTGCTTTGTA AGTTTGATCCTAATGGTCCAAAGGATAATAAATAATAGCATCTTTTAAAAAAAAAAAAAA AA
Homology of Contig U35_6688 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |