barSeed - Barley Seed Development Database

Probe CUST_20342_PI390587928

Source Contig U35_6692

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20342_PI390587928	Hv_44K_v2	TTCCAGGACCAGACCAACCCAAGAACCGCGGCAGCAAGCAAGGGGGGCGATGAAGAAGAC	190	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363670	1688	2e-24	1105 - 1164	100	60 / 60	minus	ABC18984 ABC41722
MLOC	MLOC_43394.1	1196	2e-24	501 - 560	100	60 / 60	minus	None
JLOC1	JLOC1_28056.1	977	8e-25	530 - 589	100	60 / 60	minus
Harvest21	ABC20862	469	3e-25	162 - 221	100	60 / 60	plus
Harvest35	U35_6692	495	3e-25	191 - 250	100	60 / 60	plus

Contig Sequence (495 bp)

>U35_6692 495 Hv_44K_v2
CTCCTCCACACGCGCGCATCAGTCACCGGCCACAAGCCTCCTCCCGCCCCCAATGGAGGC
CGTCCTGCGACATCCATCCCTTTCGCGCCTCAAAGCCCCGAACCCAGCTGCTCACAGAAC
CCAGTACCTCTCCAGCACCGTCCCTTGCCGTCCTCGCGTCCCCAAGCGCCGCCTCGCCGC
CGCTGCGCTGTTCCAGGACCAGACCAACCCAAGAACCGCGGCAGCAAGCAAGGGGGGCGA
TGAAGAAGACGAGGAGGGGTACGGAGAGGTGGACCGCATCGTCTCCAGCCGGACCGTCAA
GAACGCGGTGTTCGCGGAGGACGGCTCGGCCACCACCGTCACCGCCACGGAGTACCTCGT
CGAGTGGAAAGACGGGCACGAGCCGACCTGGATCCCGGCGGAGGCGATAGCCGCGGACGT
GGTGGCGGAGTACGAGACGCCGTGGTGGGATGCCGCCAAGAAGGCCGATGCGGATGCGCT
GGCCGCGCTGCTGGC

Homology of Contig U35_6692 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g03990.1	389	6e-60	protein\|signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g76290.1	400	8e-58
Arabidopsis v10	None