barSeed - Barley Seed Development Database

Probe CUST_20341_PI390587928

Source Contig U35_6693

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20341_PI390587928	Hv_44K_v2	AGCACCTGTTGGCGAGACAGACGGGGCTGTCCAGGAACCAGTCTCGAATTGGTTCATCAA	2030	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363880	2971	3e-21	2044 - 2104	97	59 / 61	plus	ABC18571
Harvest21	ABC18571	2274	3e-25	1695 - 1754	100	60 / 60	plus	ABC18571
Harvest35	U35_6693	2610	3e-25	2031 - 2090	100	60 / 60	plus

Contig Sequence (2610 bp)

>U35_6693 2610 Hv_44K_v2
GGCTCTTCCCTTTCAGAAGGCGATTGCACAAGGCGACCAAGAACTGCTGCTTCGCCCGAC
CGGACAAGGGGAAAAAATACAGAGATAGCCACCCACACCAGAGAGAGGGAGAGATAAAGA
GATTTCGAGAGGGAGGGAGACAAGCCGAGACAGAGATGGTGGCGAGGAGGTCTCCCGGAG
GCAAGCCTTTCACTCCCTCCACGAGATAACGATGTGCTCCTCCTCCTCCTCATCTTCCTC
TTAGGTTTGCTGCTGCGCGCGGCCTGCGGGAGAAGGGGATTTTTTTTCTTTGCGCCGACG
ACCAGACGACGATGATGACAGTGGCGCCGCCAGTATGGGGATAGCGGCGCCACCGTGTCA
GGCGACCAGGCAGCACGTGAGCACGCCCAAGAGCAGTGCGGCGATCCAGGACGACGGCCG
GCCGGCCACGGCGAGTTCTATGTCCCACTCCCAGGGATTCCACCAGGGCAGCAGCGGCGT
CTATGGCTTCTCCTCGGATGGCTTCGACCGCCCGGGATCCAGCCAGGACCAGCAGCATCA
AGAGCACGACCACGTGGCGCAGCAGAGCCGACGAGACAAGCTCAGGGTCCAGGGCTTCGA
CCCCGCCGCCGCCGGCCTGCTCCCTATCGATGGCGACCAGCACGTCGAGCCCGGCGCCAT
GTACGACCACGCCGCCGCCGCCGGCGCCTCCAACATGCTCGCCGAGATGTTCAACTTCTC
CGCCCAGACGCCGTCGGGGCCGTCCGCCACCGAGCTGCTGGCCAGCCAGATGAACGCCAA
CTACCGCTTCGGGTTCCGGCAGCAGGCGCCGGGAGCGGTAGCCGGCTTGCCCGGCGACGG
CGGTTGGTTCGGGAGCGCCGGGCCTGGCCGCGCTGGCGTGGTCCTCGGCGGGGCCAACTT
ATTAGGTGAGACGTCCTCGCCCAAGCAGCAAGGCGGCATGGCGGGCCTCGCCACCGACCC
GGCCGCCGCGATGCAGCTCTTCTTGATGAACCCTCAGCAGCAGCAGCAGTCAAGGTCGTC
GCCGACATCCCCTCCGCCGTCTGACGCGCAGTCGGCCATCCAGCACCACGAGGCGTTCCA
GGCGTACGGCAACGCGGCGAGCTCGTTCGGCGGCGGCGGGGCCGGCGTGGTGGAAGGCCA
GGGCCTCTCCCTCTCCCTGTCGCCGTCGCTACAGCAGCTGGAGATGGCGAAGCAGGCCGA
GGAGCTAAGGGTGAGAGACGGCGTGCTCTACTTCAACCGACAGCAGCAGCAGCAGCAGCA
GCAGCAGGCCGCGTCGGTGCAACAGCTCCCGATGGCATTGCACGGCCAGGTGGGCTCGAT
GGGGCAGCAGCTCCACGTCGGGTACGGCCCCGCCGGGGTCGCCGGCGTGCTGCGCAACTC
CAAGTACACGCGCGCGGCCCAGGAGCTCCTCGACGAATTCTGCAGCGTGGGCCGCGGGCA
GACGATCAAGGGAGGCGGGCGCGGCGGCTCCTCGTCGAACCCTAACGCGAGCAAGGGCGG
GCCCTCCAGCTCCGGCGCCGCCCAGTCGCCATCATCGGCGTCGAAGGAGCCCCCGCAGCT
CTCCCCCGCCGACCGGTTCGAGCAGCAGCGCAAGAAGGCCAAGCTCATCTCCATGCTCGA
CGAGGTGGATCGGAGGTACAACCACTACTGCGACCAGATGCAGATGGTGGTGAACTTCTT
CGACTCGGTGATGGGGTTCGGGGCGGCGACGCCCTACACGGCGCTGGCGCAGAAGGCCAT
GTCGCGGCACTTCCGGTGCCTCAAGGACGCCATCGCCGCGCAGCTGCGGCACACCTGCGA
GCTGCTTGGGGAGAAGGACGCCGGCACCAGCTCCGGGCTGACCAAGGGGGAGACGCCGCG
GCTCCGCGCCATCGACCAGAGCCTCCGGCAGCAGCGCGCCTTCCACCACATGGGCATGAT
GGAGCAGGAGGCGTGGCGGCCCCAGCGCGGCCTCCCCGAGCGCTCCGTCAGCATCCTCCG
CTCCTGGCTCTTCGAGCACTTCCTACACCCGTACCCCAGCGACGCCGATAAGCACCTGTT
GGCGAGACAGACGGGGCTGTCCAGGAACCAGTCTCGAATTGGTTCATCAACGCCCGCGTC
CGGCTGTGGAAGCCCATGATCGAGGAGATGTACCAGCAGGAGACCAAGGAGCTCGAGGGC
TCCTCCGCCGCCGCCGGCGGGGGCGGCGGGGGCGGGCCCGAGTCCGGCAACGACCCCTCT
GGCGCCGACGACTTGCACTCCCCGACGACCACCGGCTCGCAGCAGCAGTTAGTAATACAC
CACGGCGGCGGCAGGTACGGCCAACAAGAACACGGGATGTCCGGCGTCCACCCCCATAAG
CTCGACCCCGGCGCGGGGCCATCCGTGGCGGACGCCGCCTTCGTCGGTCTTGACCCGGCG
GAGCTCCTTGGCGGCGACGCGCACGTGGGTGCCGCCGACGACCTGTACGGGAGGTTCGAG
CCCGGGGTGAGGATGAGGTACGGGCCCGCCACGACCGGCGCGGTCTCCGGCGACGTGTCC
CTTACGCTGGGCCTGCAGCACGCCGGCGCCGGCAACCAGGGGCCGGACGGCAGCGGCCGG
TTCTCCTTGAGAGACTACAATGGTTGTTGA

Homology of Contig U35_6693 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g52239.1	791	0.0	protein\|homeobox domain containing protein, expressed
Brachypodium v1_2	Bradi1g09615.1	798	0.0
Arabidopsis v10	AT2G23760.1	627	6e-104	\| Symbols: BLH4, SAW2 \| BEL1-like homeodomain 4 \| chr2:10107951-10112736 REVERSE LENGTH=627