barSeed - Barley Seed Development Database

Probe CUST_20339_PI390587928

Source Contig U35_6695

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20339_PI390587928	Hv_44K_v2	TGTTGTCAGACGTTTTGTGTTGTTGCTAAGTAATAAAACCAAGTGCTTGTGTGGAAAAAA	425	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.676	2.509	3.471	2.622	0.588	0.472
Raw	309.628	1833.038	2148.400	2574.085	198.734	175.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72503.2	2153	3e-22	253 - 308	100	56 / 56	minus	ABC40836
MLOC	MLOC_72503.1	2866	3e-22	531 - 586	100	56 / 56	minus	ABC40836
Harvest35	U35_6695	496	3e-25	426 - 485	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_6695 496 Hv_44K_v2
CGGATCAACCACGTGTGCTTCAGCCCGGACGGCCAGTGGCTGCTCTTCCCGGCCAACCTG
GGCGGCGTCATGGCGGAGCCCATCTCGGGGCCGAACCAGTTCCAGCCGTACGGCGACCTG
TACGTGTGCCGGCTGGACGGCTCCGGTGTGCTCAGGCTTACGTGCAACGCCTACGAGAAC
GGCACGCCGACGTGGGGCCCGGCGCTGGGCGTGGACTCGCTGTCGCTGGGCGCTCCCGCC
GCGGACGATTCGCTGGGCCAGTTCGATGAGCCGCTGTGGCTCACCTGCAACGTGTGAGGG
GCAGAGATGGTGATTGGTTGATGGGCGCACACGCTGCGGTTTCGAGTGGCTTCGGTCGAT
AATAAATGGTGAGAATGATCCAATTCTTGTTGTGTGGGGGCTATGCTTAATTAGAAAGTT
GATTGTGTTGTCAGACGTTTTGTGTTGTTGCTAAGTAATAAAACCAAGTGCTTGTGTGGA
AAAAAAAAAAAAAAAA

Homology of Contig U35_6695 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g44410.1	660	6e-52	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g20050.1	675	3e-55
Arabidopsis v10	None