barSeed - Barley Seed Development Database

Probe CUST_20324_PI390587928

Source Contig U35_11713

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20324_PI390587928	Hv_44K_v2	CCACTTATCAGAACAGCAATAGAGAAAAACCCAGATCTACATGTAGCTTTGATTGGAATG	1061	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.076	1.199	1.289	1.059	0.507	0.412
Raw	38.054	65.215	60.831	85.944	13.383	11.884

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374585	2179	2e-24	1350 - 1409	100	60 / 60	plus	ABC19184 ABC40839
MLOC	MLOC_5078.2	1585	2e-24	1204 - 1263	100	60 / 60	plus	ABC19184
MLOC	MLOC_5078.1	1831	2e-24	1123 - 1182	100	60 / 60	plus	None
MLOC	MLOC_5078.7	1470	2e-24	504 - 563	100	60 / 60	plus	None
MLOC	MLOC_5078.3	1883	2e-24	1092 - 1151	100	60 / 60	plus	ABC19184 ABC40839
MLOC	MLOC_5078.6	1594	2e-24	1099 - 1158	100	60 / 60	plus	ABC19184
MLOC	MLOC_5078.5	1914	2e-24	1115 - 1174	100	60 / 60	plus	ABC19184 ABC40839
JLOC1	JLOC1_3235.5	1894	8e-25	1083 - 1142	100	60 / 60	plus
JLOC1	JLOC1_3235.4	1864	8e-25	1053 - 1112	100	60 / 60	plus
JLOC1	JLOC1_3235.3	1920	8e-25	1092 - 1151	100	60 / 60	plus
JLOC1	JLOC1_3235.2	1890	8e-25	1062 - 1121	100	60 / 60	plus
Harvest21	ABC22203	1181	3e-25	1062 - 1121	100	60 / 60	plus
Harvest35	U35_11713	1181	3e-25	1062 - 1121	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_11713 1181 Hv_44K_v2
CAGGCGAGGGCGGGAGCGCCGACAAGGAGTTCGTCTACTTGAACGATGCGAGCACCGTCG
ATTACGGGAAAGAGCTCGCCGACGCGGCAGATGGCGCGGCGGATGCTGCCGTCGGGGTGG
CCGCCGGTGGCAATGGAGGCGGCCTGTCGGGGTTCGCTATGGACTCGCTGGTCGGCGTCC
TCGACGGGTTCCATAACCTCACCGGTCTGCCATGGTGGTTAACAATCTCCGCCTCCACTG
TGGCCATGCGGCTAATCATACTCCCTACCCTGATAGTACAACTTCAGAAGACCGCTAAAA
TCGGCCAACTTTTTCAAAAATGAAGGAGTTATCGTGACCAATACTCTCTTTTCCGGAAGA
AAAGGCAAGAGCTTGGTTGCCCCTCCTTTCTTTGGAATTTCGCCTACTTTGCAGTTCAGT
TCCCTTGCTTTATACTGTGGATGGCAAGCATCCGGAGTATGTGCCTCAGTAATCACCCTG
GATTAGATAATGGCGGTATTCTGTGGTTTAATAACTTGACCGAGTTTCCACATGGTGCTT
TAGGTCCTGTTTTTCCTATCTTAGTTGCTGGGCTCCATTATTTAAATGTCCAGATTTCCT
TCCAGAAAAGCCAGGCAAAGCATTACCCTGGAGTTTTAGGTTTATTAGCAAAGTACTACA
GGATTTACCTTGATATTATGGCTATTCCTTTGTTTCTTATCGCGTATGTGGTCCCTCAGG
GGAGCCTGGTCTACTGGACTACCAATGGTTTATTTCACGTAGCACAGCAATTGTCCCTCA
GAAATGATACTGTGTGCAAGATGTTGGGATTGCCTGACACTGGAGCTCTCGCTGGTAATA
CATCGCCAAAATCTCTTCACGAGGGTCAGAAGATAATGCAGCGGTGGCCCCTTGGAGATT
CTCACATGCAATCAAAATTGGGATCGTCTACAACTCCGAAGTTTATGTTTGAGGATAGTA
AAATAATGGATGAAAATGTATCTGCTGAGTCCAGTTCACCTGAGGAGCTTCTTGAACAAG
CATTACAATATTTGGGAACTGGCTGCCAAGATCAAGCTGTTCCACTTATCAGAACAGCAA
TAGAGAAAAACCCAGATCTACATGTAGCTTTGATTGGAATGGGACAAACCTTGTTCTCAA
ATAAGTTGTTTCCTGAAGCCTCATTGTGTTTTGAACATGCT

Homology of Contig U35_11713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g07474.1	345	3e-97	protein\|tetratricopeptide repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g48120.2	378	6e-173
Arabidopsis v10	AT1G65080.1	525	3e-83	Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain \| chr1:24176619-24180729 FORWARD LENGTH=525