barSeed - Barley Seed Development Database

Probe CUST_2031_PI390587928

Source Contig U35_18433

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2031_PI390587928	Hv_44K_v2	TTCAAGTTTCAAACAACTGCACCCAAGAGTTGCTTTATGCGTCCTCCTGGAGCCATACTT	458	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.731	0.869	2.064	2.382	0.942	0.929
Raw	68.922	125.724	263.727	487.613	66.338	72.846

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54695.2	823	2e-24	187 - 246	100	60 / 60	plus	ABC11366 ABC11367
MLOC	MLOC_54695.1	1432	2e-24	650 - 709	100	60 / 60	plus	ABC11366 ABC11367
JLOC1	JLOC1_35216.1	1478	8e-25	698 - 757	100	60 / 60	plus
Harvest21	ABC11366	994	3e-25	292 - 351	100	60 / 60	plus	ABC11366
Harvest21	ABC11365	529	3e-25	459 - 518	100	60 / 60	plus
Harvest35	U35_18434	1070	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_18433	532	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (532 bp)

>U35_18433 532 Hv_44K_v2
GAGAGAGAGATAGAGGAGGGAGAACCGAAGCAGAGTGCAACCCAACCACATCCTCCGTAT
CACGCTCGTGGTAACTGGTAGTAGTAACTTCCTCGCCCATGGCGATCTCCGGCGACGAGA
GGTACGCGCCCGCCGCCGACTCCGGCGGCGGGAAGCTCTGGAACCTCTGCCGCATGCCCT
TCAGGCAGGCCAGCGGCGCGCCGGCGCCAGCCTCGTCCTCGTCCTCCTCCGGGATCCACC
ACTCGGCCGGCCGCTACGGCGTCCATGAGGCGCCCGTCGCCGGAGACGGCGGCCCTCCTG
CCGCGCCGGCCGGGATCTCGACGGTCGCAAAATCTCTGTTGCCGGCGCGGCGCCGCCTCC
GGCTCGATCCGTCAAACAAGCTCTACTTCCCATATGAACCAGGAAAGCAGGTCAAGAGTG
CAATTAGGATAAAGAATACAAGCAAGTCACATGTAGCATTCAAGTTTCAAACAACTGCAC
CCAAGAGTTGCTTTATGCGTCCTCCTGGAGCCATACTTGCCCCTGGCGAGAC

Homology of Contig U35_18433 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None