barSeed - Barley Seed Development Database

Probe CUST_20312_PI390587928

Source Contig U35_11726

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20312_PI390587928	Hv_44K_v2	TAACTAAAAATGTCCCCTTTTTGTGTGAACTGCAGAGATTGCTGAGGAGCTGGACGTGCA	285	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63866.2	1877	3e-21	1431 - 1490	97	58 / 60	minus	ABC11506
MLOC	MLOC_63866.5	1695	3e-21	1231 - 1290	97	58 / 60	minus	ABC11506
Harvest21	ABC47558	526	6e-22	286 - 345	97	58 / 60	plus
Harvest35	U35_11726	526	3e-25	286 - 345	100	60 / 60	plus

Contig Sequence (526 bp)

>U35_11726 526 Hv_44K_v2
AGAGGGAGGGGAGGATGGGGACCCGGGAGTGGCCGCTGCCTCGCATGTACGAGCACTTCC
TCGGCAAAGAGCGCGCCCGGTGGCCGCCGGAGGCCAGGTTCATCGAAGCCGCGCACCACG
GCCACGTCCGCGAGATCAAGAGTTGGAGTGCTGGGGCTTGGGGGATTTTCTCGTCACAAT
TGGGGGTTTTCAGACCAAATTCTTGGCCCCCTTCCTAAGAATCAGTGTCGATTTGTTTCT
GATTCTGATTTAACTATTCATATGCTGCGTTCTTGTCCCGATTGGTAACTAAAAATGTCC
CCTTTTTGTGTGAACTGCAGAGATTGCTGAGGAGCTGGACGTGCAGGGGCATGGGATCCC
GGTTACGGTGGCCAACACCACCTACATGGGCATGAACGCCCTCCACGCCGCCGGTGCACT
CGGCAGGCTGCCGGTCTACCGGTACCTCGTTGAGGAGGTCAAGATGGACATCCACAAGCC
TGACACCCTTATTGATTTCACACCTGTGGAGCATGCTCTCAAACAT

Homology of Contig U35_11726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None