barSeed - Barley Seed Development Database

Probe CUST_20310_PI390587928

Source Contig U35_11729

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20310_PI390587928	Hv_44K_v2	AAGCGGGACCAGGTACATTCATATCTAGATAAATGTAAGACAAGAATTTTGGGATGGAGG	558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371783	2074	2e-24	1583 - 1642	100	60 / 60	plus	ABC18157
JLOC1	JLOC1_41402.1	1612	8e-25	1036 - 1095	100	60 / 60	plus
Harvest21	ABC24116	744	3e-25	559 - 618	100	60 / 60	plus
Harvest35	U35_11729	744	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_11729 744 Hv_44K_v2
GGGTGCGATGATTGCATACACTGGTTTACTGGCATATGCACATGGTGTGATCACACCCCT
GGAGGATTCGACATTTACTCAAAGGTTCCGAACTGATGAAGTTCATGCAATTTGGAGGGA
GAAAGAGGTGCCAGTATTAAATAACATGGATTCTGATACAGTAGCTGAAGTATCCATAGA
TGGAGTCTCTGTGCCGACTCCAATTGCTGTAGATTCCTGAGGTGCTCGTGCCTTTCGTTG
ATTATTTCGGAAAGATTGCGTTGCTACAAATATGAGGCTCTGCTTGATGATTTCTAGAAA
GCCTTGAAGGCTAATGGCAGAGTGCCTTCTACTGTTTGTTCGTCACACAATGACTGACTG
GAATCCCTCACCAGTTGCAGTGATCCACAGAAAGACATTGCTAACTACTCTCCCCGTTCC
AAATTACTCCCTCCGTCTCAAAATTCTAGTCTTAGGTTTGTCTAAAAATAGAAAAGCGGG
ACCAGGTACATTCATATCTAGATAAATGTAAGACAAGAATTTTCAAAATTCTAGTCTTAG
GTTTGTCTAAAAATAGAAAAGCGGGACCAGGTACATTCATATCTAGATAAATGTAAGACA
AGAATTTTGGGATGGAGGGAGNTATTTGAAGGTCTAGGTTTGCCCCAAGTTAAAACCCTG
TCAAGTTTGACCAAGTCTATAAAAAAGTGAACCAACATCTACAACGCCAAATTTACTTTA
CTAGATTCATCATAAATTATATTT

Homology of Contig U35_11729 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None