barSeed - Barley Seed Development Database

Probe CUST_2030_PI390587928

Source Contig U35_18434

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2030_PI390587928	Hv_44K_v2	CTGTTTATCACTTGCGAGAGCTGACCTTGCTTGTGATGGTTTGTTAATGATGTATTTTTT	973	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.304	1.375	1.108	0.884	0.358	0.355
Raw	711.315	1138.143	829.615	1033.559	147.954	157.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54695.3	780	2e-24	680 - 739	100	60 / 60	plus	ABC11366 ABC11367
MLOC	MLOC_54695.1	1432	2e-24	1332 - 1391	100	60 / 60	plus	ABC11366 ABC11367
JLOC1	JLOC1_35216.1	1478	8e-25	1380 - 1439	100	60 / 60	plus
Harvest35	U35_18434	1070	3e-25	974 - 1033	100	60 / 60	plus

Contig Sequence (1070 bp)

>U35_18434 1070 Hv_44K_v2
AACTTCCTCGCCCTGGCGATCTCCGGCGACGAGAGGTACGCGCCCGCCGCCGACTCCGGC
GGCGGGAAGCTCTGGAACCTCTGCCGCATGCCCTTCAGGCAGGCCAGCGGCGCGCCGGCG
CCAGCCTCGTCCTCGTCCTCCTCCGGGATCTCGACGGTCGCAAAATCTCTGTTGCCGGCG
CGGCGCCGCCTCCGGCTCGATCCGTCAAACAAGCTCTACTTCCCATATGAACCAGGAAAG
CAGGTCAAGAGTGCAATTAGGATAAAGAATACAAGCAAGTCACATGTAGCATTCAAGTTT
CAAACAACTGCACCCAAGAGTTGCTTTATGCGTCCTCCTGGAGCCATACTTGCCCCTGGC
GAGACTATCATAGCGACTGTTTTCAAGTTTGTCGAGCACCCAGAGAATAATGAGAATGTT
CTGCAGAAGTGCAAGGTCAAGTTCAAGATTTTGAGCTTGAAGGTCAAAGGACCCATGGAA
TATGCACCAGAATTGTTTGACGAGCAGAAAGATCAGGCAGTTGTTGAGAAGATACTGAGG
GTTGTTTTCTTGGATGTTCAGAACCCAGGCCCACAACTGGAAAAGCTGAACACTCAGTTA
GCTGAGGCAGAGGCTGCACTTGAGGCGCGGAAGAAACCTCCAGAAGAGAATGGTCCTAAA
ATTGTTGGTGAAGGGCTTGTCATTGATGAATGGAAGGAGAGGAGGGAAAGATACCTCGCT
CAACAACAGGTCGAAGCGGTCGACTCAGTGTAAATTGTACCTTCTTCTGCTAGAGCAGCA
TATGGCTTGAGCAATGTGTTGTGATAATTCTTATAAACTGCTAGGTTCTGCTAGTTTAGT
GTGCGGTAGTTTAGAGTTGTGCTTGAAGGATCGGTCTCCAGTGAACAAGCTAACCTTTGG
TTGTTTCAGTACTCGCTGTGTAACAGATAAATTAATTGGCTTGTCAGAACAATAAAGTGC
ATATGCGTAGCTTCTGTTTATCACTTGCGAGAGCTGACCTTGCTTGTGATGGTTTGTTAA
TGATGTATTTTTTTTGTCGATTCTTTGCCGCTTCACAAAAGAACTTCTGC

Homology of Contig U35_18434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37270.1	285	6e-117	protein\|MSP domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g24850.1	268	2e-123
Arabidopsis v10	AT5G54110.1	266	2e-84	\| Symbols: ATMAMI, MAMI \| membrane-associated mannitol-induced \| chr5:21958356-21960367 FORWARD LENGTH=266