barSeed - Barley Seed Development Database

Probe CUST_20309_PI390587928

Source Contig U35_23700

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20309_PI390587928	Hv_44K_v2	GCGGCAGCGGATCGCCATCGCGCGAGCGCTGGTGAAGCAGGCGGCCATCATGCTGCTGGA	490	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.766	1.395	2.368	1.493	0.478	0.452
Raw	32.628	93.388	137.659	129.633	15.046	15.182

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5438.2	4727	2e-24	4006 - 4065	100	60 / 60	plus	ABC18416
MLOC	MLOC_5438.1	4637	2e-24	3918 - 3977	100	60 / 60	plus	ABC18416
JLOC1	JLOC1_3500.1	4623	8e-25	3904 - 3963	100	60 / 60	plus
Harvest21	ABC19810	548	4e-24	491 - 548	100	58 / 58	plus
Harvest35	U35_23700	550	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (550 bp)

>U35_23700 550 Hv_44K_v2
CGGAAATCGAGCCCGACGACGTGGACACCGCAGCCGTCCCCGAGCGGCCCAGGGGCGACG
TGGAGCTGAAGCACGTCGACTTCTCGTACCCGTCGCGGCCGGACATTCAGGTCTTCCGGG
ACCTGAGCCTCCGCGCCCGCGCCGGCAGGACGCTGGCGCTGGTGGGGCCGAGCGGGTGCG
GCAAGAGCTCCGTGCTGGCGCTGATCCAGCGCTTCTACGAACCCAGCTCCGGGCGCGTGC
TCCTGGACGGCAAGGACATCCGCAAGTACAACCTCAAGGCACTGCGGCGGGTGGTGGCCA
TGGTGCCGCAGGAGCCGTTTCTTTTCGCCGGCACCATCCACGACAACATCGCGTACGGGC
GCGAGGGCGCGACGGAGGCGGAGGTGGTGGAGGCGGCAACGCAGGCGAACGCGCACAAGT
TCGTGTCGGCCCTGCCGGAAGGGTACAAGACGTGCGTCGGGGAGCGCGGGGTACAGCTGT
CTGGAGGGCAGCGGCAGCGGATCGCCATCGCGCGAGCGCTGGTGAAGCAGGCGGCCATCA
TGCTGCTGGA

Homology of Contig U35_23700 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g45030.1	1345	3e-89	protein\|multidrug resistance protein, putative, expressed
Brachypodium v1_2	Bradi3g12627.1	1377	2e-88
Arabidopsis v10	AT2G36910.1	1286	2e-84	\| Symbols: ATPGP1, PGP1, ABCB1 \| ATP binding cassette subfamily B1 \| chr2:15502162-15507050 FORWARD LENGTH=1286