barSeed - Barley Seed Development Database

Probe CUST_20305_PI390587928

Source Contig U35_23705

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20305_PI390587928	Hv_44K_v2	TCAGTGTCCCTTTTTGTCTTGTCTTGAATAGTTGATACACAAATTCAGTTCTGGAATCAT	356	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.482	1.300	1.304	0.833	0.253	0.162
Raw	1308.407	1792.517	1576.210	1590.047	168.303	117.287

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2171.1	2245	2e-24	396 - 455	100	60 / 60	minus	ABC10197 ABC19539
MLOC	MLOC_2170.6	3936	2e-24	3390 - 3449	100	60 / 60	minus	ABC10197 ABC19539
MLOC	MLOC_2170.1	3946	2e-24	3381 - 3440	100	60 / 60	minus	ABC10197 ABC19539
JLOC1	JLOC1_1307.2	1898	8e-25	1820 - 1879	100	60 / 60	plus
JLOC1	JLOC1_1307.1	1654	8e-25	1576 - 1635	100	60 / 60	plus
JLOC1	JLOC1_1306.3	3596	8e-25	3205 - 3264	100	60 / 60	minus
JLOC1	JLOC1_1306.2	3645	8e-25	3254 - 3313	100	60 / 60	minus
JLOC1	JLOC1_1306.1	3727	8e-25	3336 - 3395	100	60 / 60	minus
Harvest21	ABC19539	434	3e-25	357 - 416	100	60 / 60	plus	ABC19539
Harvest35	U35_23705	434	3e-25	357 - 416	100	60 / 60	plus

Contig Sequence (434 bp)

>U35_23705 434 Hv_44K_v2
GATCTATTTCATGTAGAGGAGGAGACCTGATGGAGGGGAGCTGAATATAAACGGCAAGAG
TTCTCAATCCAAATGTTGATATATATCAGTCCTCAACCTTTGAAGCTGCGCGCCTGAATG
ATATGTCTGTTTTTTTGTCGCTCCACCATATACCTGTCGCCGAACTTTCGCCTTCACCGT
GATGCAATGTTACGTACATACAAACGGTAGATGTTATTACTGCTTTTATGAACATCAACC
TCTGGTGGAGGCTTAAGATGTAAGAAATGTTACTTAGCTGTCCTACCTGTAATACCCTTT
ACACTGTACTGTTGAAGCTTGTCACTGCTCATACTGAGCAATCACACTGAGACGTCTCAG
TGTCCCTTTTTGTCTTGTCTTGAATAGTTGATACACAAATTCAGTTCTGGAATCATCAAA
AAAAAAAAAAAAAA

Homology of Contig U35_23705 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None