barSeed - Barley Seed Development Database

Probe CUST_202_PI415269222

Source Contig TA41956_4513

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_202_PI415269222	Hv_44K_v2	ATTTGAGGCCAGAAAGGAGGATCTGTTAGCGTAAGGTGAACAAATGGGTCCTTCCTCTTT	725	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251256.1	860	2e-24	774 - 833	100	60 / 60	plus	ABC11814
Harvest21	ABC11814	825	3e-25	743 - 802	100	60 / 60	plus	ABC11814
Harvest35	U35_19535	825	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (791 bp)

>TA41956_4513 791 Hv_44K_v2
GGAGGAGCGAGCGGCGGCGGCGGCGATATGCAGTTCGTCCGAGGCGTGGGCGGCGGCGGC
GGCGGCGGGGGAGGAGGAGGGGCGTGGGAGGTGCTGAGGAGGCATTTCTCGCGGAAGCGG
GCGGTGGATATCCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTGGCCATCTCC
GGCCGCCTCCTCCAGATCCTCGCCGATAACGGGCCCCTCACCGTCGGCAACACCTGGAAC
CACGCCAAGGATGCTGCGATCGACGGCCTCAACAGCAAGACCCACATGAAGGTCCTGCTC
AAGTGGATGTGGGGGAGGAGGATCATCAAGCTCTCGTGCACGCAGGTGGGCAACACCAAG
AAGTTCCTCTACTCCCCGTTCACCGCCGACGACGCCGAGGCGACCGAGGAGCCAGCAGAG
GAGCAGCCGAAGAAGAAAGGGTGGAAGGGGAAACACCCAAAGTACCAGACCAAGAAACAG
CCGGCAGCAGCGGCTTGACTCTGATCCGCTGCGAGCATTCCTTCGGGCATTTTCCTGCTG
CTGTTGTTTCTTTTCTGTTTTACTTAGCACAGAAGAAAAGATTTCGTGATGGACCATTTG
GGTTGCCGCAAATTTCGCTGGCAGGCCAGTTTGCTGGGCTCTGTGTTGTAAACTCGCTGG
TAGAATAATGATGACATGAAAATCTAATACTACGTATCTATGATCCTTGAGATGCGTTGT
GTGAGATTTGAGGCCAGAAAGGAGGATCTGTTAGCGTAAGGTGAACAAATGGGTCCTTCC
TCTTTGTGTGT

Homology of Contig TA41956_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g63550.1	159	3e-56	protein\|expressed protein
Brachypodium v1_2	Bradi1g01320.1	162	9e-64
Arabidopsis v10	None