- Probe CUST_20298_PI390587928
- Source Contig U35_11734
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20298_PI390587928 | Hv_44K_v2 | GGTCTAAGTAATAGTGCAAGGAGTTGAGACATTCTTGTAAGGTTGTTTCATGTATGCTAG | 412 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.011 | 1.341 | 1.307 | 0.938 | 0.419 | 0.487 |
| Raw | 853.873 | 1845.355 | 1514.073 | 1705.739 | 262.237 | 338.678 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_31648.1 | 1731 | 2e-24 | 113 - 172 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_20764.1 | 1709 | 8e-25 | 91 - 150 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC25317 | 487 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_11734 | 487 | 3e-25 | 413 - 472 | 100 | 60 / 60 | plus |
Contig Sequence (487 bp)
>U35_11734 487 Hv_44K_v2 ACTGTCCATCTGGGTTCTTGAGAACTATGATACTCAAGATTGGGTCCTGAAGCATACTGT GAGCTTTGTGGAGCTGTTCACAAAAAAGAGTTGCACAGTTGACAAAAATCACTACAATGT GGTTGCCATGCATCCAGATGGAAATGTTGTTTTCATTGTTCTATATCGGAACCAAAAGCT AATATCATATGACATGGACCATAAGCTAGTGAGTATTATCAGGACATTCAGGAACGAACC TCCAGATATGCATGTTGTACCTTATGTTCCCTGTTTCTCTGAGTCACCGGCACTCCCAAA TAAGCACTGAATGTGCTGCGTCCATCTACGCAGAAGGTAGCAACTTGGTTAGATCTAGTA TAATTAGTTGATCTATTATGCCCATGGTTGGATGTATCCTTCTCATGCTTTTGGTCTAAG TAATAGTGCAAGGAGTTGAGACATTCTTGTAAGGTTGTTTCATGTATGCTAGATTATTAA ATGATGT
Homology of Contig U35_11734 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |