barSeed - Barley Seed Development Database

Probe CUST_20296_PI390587928

Source Contig U35_11736

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20296_PI390587928	Hv_44K_v2	AAGGAAGACACTACTGCCAGCCTCAACTCTGCCCACTCCAAGGAAACCAAGGAGAGTACC	294	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365468	1260	2e-24	276 - 335	100	60 / 60	plus	None
MLOC	MLOC_16609.2	1662	2e-24	1137 - 1196	100	60 / 60	minus	None
MLOC	MLOC_16609.5	758	2e-24	200 - 259	100	60 / 60	minus	None
MLOC	MLOC_16609.1	1458	2e-24	1068 - 1127	100	60 / 60	minus	None
MLOC	MLOC_16609.3	1669	2e-24	858 - 917	100	60 / 60	minus	None
JLOC1	JLOC1_11448.2	1496	8e-25	456 - 515	100	60 / 60	plus
JLOC1	JLOC1_11448.1	1499	8e-25	456 - 515	100	60 / 60	plus
Harvest35	U35_11736	509	3e-25	295 - 354	100	60 / 60	plus

Contig Sequence (509 bp)

>U35_11736 509 Hv_44K_v2
TCGAGCACTGTTGGCCTGGGCTGTTGGCTCTTCTCTGAACCCCTCCTCCTTGCCAAGAAA
ACCTCATCTCCAACACAAGGGGGCGGTAGCTCGCTAGCTAGTAGACGTTGAGCAATGGCA
GGATTCTCACACCTCCCGCAGCAGATGGAGTATGGCCTCACCAATGCCGGCAGCTTCTTG
CTCTGCCATGGCAACCCTGAGGATGCAGCAGCAGCAGCCTCAAGGGAGGGCTCATCTGTG
GTTCTTGACACCCCTCTTGTGGCCACAGCTTCCATGGAGAAGAAGAGGAAGCCCAAGGAA
GACACTACTGCCAGCCTCAACTCTGCCCACTCCAAGGAAACCAAGGAGAGTACCAGGAAG
AGGGGAGGCAAAAAGCAGGACAAGGAGACGGCGGAGGAGGAGGAGGAACCAAAGGGGTAC
ATCCATGTGAGGGCAAGGAGAGGGCAGGCAACGGACAGCCACAGCCTTTCACAGAGGGTG
AGGAGGGACAGGATCAGTGAGCGGATGAG

Homology of Contig U35_11736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None