barSeed - Barley Seed Development Database

Probe CUST_20289_PI390587928

Source Contig U35_23714

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20289_PI390587928	Hv_44K_v2	GTACACATTCTTTGGCTACTCGTATGATCACGCTGAAGCATAAATTCAGTTTTTAGCTGC	199	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.950	1.927	1.112	0.724	0.264	0.285
Raw	1940.053	2987.982	1519.627	1586.625	198.931	233.323

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66388.7	2796	2e-24	2432 - 2491	100	60 / 60	plus	ABC19511
MLOC	MLOC_66388.2	2931	2e-24	2594 - 2653	100	60 / 60	plus	ABC19511
MLOC	MLOC_66388.3	2818	2e-24	2481 - 2540	100	60 / 60	plus	ABC19511
JLOC1	JLOC1_43741.4	2839	8e-25	2476 - 2535	100	60 / 60	plus
JLOC1	JLOC1_43741.3	2843	8e-25	2480 - 2539	100	60 / 60	plus
Harvest21	ABC19511	285	3e-25	200 - 259	100	60 / 60	plus	ABC19511
Harvest35	U35_23714	285	3e-25	200 - 259	100	60 / 60	plus

Contig Sequence (285 bp)

>U35_23714 285 Hv_44K_v2
CTGAGCACCGATATGGCTCTGCATACAGCCCGTGAGTTCCTCCGGAGGATGGCGCAGCCA
TACGACAAGGCTGGGAGCGGCGGGGCGAAGACGCTGTTGACGGAGGAGGACCTGCAGGAC
ATGGGTCGGGCCCCCATGGAGACGTGAACCCAGAGAGTGTGCTGTAGCCTGTAGGTACAC
AATAGTCAAAGTTGCTGATGTACACATTCTTTGGCTACTCGTATGATCACGCTGAAGCAT
AAATTCAGTTTTTAGCTGCAAAAAAAAAAAAAAAGGGCGGCCGCT

Homology of Contig U35_23714 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None