- Probe CUST_20287_PI390587928
- Source Contig U35_23717
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20287_PI390587928 | Hv_44K_v2 | TCACGTCAATCAATGGCCGGCGATGAGATTCAATAATAAAATATTCTTGTGACATGCAAA | 264 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 16.072 | 7.275 | 2.211 | 0.141 | 0.023 | 0.023 |
| Raw | 4797.497 | 3358.530 | 906.383 | 92.386 | 3.352 | 4.229 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_39959.1 | 344 | 1e-22 | 289 - 344 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC19336 | 338 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus | ABC19336 |
| Harvest35 | U35_23717 | 338 | 3e-25 | 265 - 324 | 100 | 60 / 60 | plus |
Contig Sequence (338 bp)
>U35_23717 338 Hv_44K_v2 TTGTGTCTTATCTGATGGAGGGGAAAATCATTCTCCTTTGCCTTATGGTGATTGTGCAAC TAGGCATAGGCAACCCCATTCACGTTGATGATTGCGTGAACGTAATTGCCTTTACAGCCG CTGAATGCTCAGCATTAGATTGCCGAAGATCATGCCGGAATTCCTGGGCAGAACACGTCT ATAGAGCTTATTGTAGGGTTGGTGAAACTCAGCAATATTGTTACTGCTTTATTTGTGATT AAAAGTGATTGTTGCTGGTACCCATCACGTCAATCAATGGCCGGCGATGAGATTCAATAA TAAAATATTCTTGTGACATGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23717 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |