barSeed - Barley Seed Development Database

Probe CUST_20276_PI390587928

Source Contig U35_23721

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20276_PI390587928	Hv_44K_v2	TTGCGTTGTTTTGTCTCTGTCGATCTATCTGAGTGTACGGTTAATAAATCAATGGAATTC	655	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.688	8.203	2.018	0.658	0.375	0.536
Raw	279.333	226.118	50.907	26.883	3.132	7.961

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65350.1	365	2e-24	306 - 365	100	60 / 60	plus	ABC46234
JLOC1	JLOC1_42997.1	1619	8e-25	1440 - 1499	100	60 / 60	plus
Harvest35	U35_23721	738	3e-25	656 - 715	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_23721 738 Hv_44K_v2
CACGCGTCCGCGCCGCCGTCATCGACGGCGTCGGCAAGGGGCTCACCCTCACGGAGCACG
ACATCGAGCCGGCGCGCATGACGCTGCACCGCTTCGGCAACACCTCGGCCAGCAGCGTAT
GGTACGTGCTGTCCTACATGGAGGCCAAGAAACGGCTCAGCAAGGGCGACCGCGTCCTCA
TGCTCACCTTCGGCGCCGGATTCAAGTGCAACAGCTGCGTCTGGACGGTGGAGAGGGCCA
CCGCCGATGCCGGCGTGTGGGCGGACTGCATCCACGAGTACCCGCCCAAGGAGATCAGGA
ACCCCTTCATGGAGAAGTACGGCTTCGTCAAGGACATGAGCGCCTTGTGATACAGTCCAC
CAACTTCACGTACATGATCGTCACTTAATTTCTACGTATACACGGTTGATTTTTAAGAAG
ATGAAATAGTACAAGAAGGACATGACGAGGAAAAAAATAGAGTTAAGCTAAGGATTCATT
TGCAGGTACACATCTATCTATCTATCTATAGCGTACTTATGATTCTTTCTTGTAATGGTG
GCCGTGACGGAGGAGCGGCGCATTATTGAACACTGCTGTGGGCCGCGGGAGATGTGTTCT
TTTGTACGTAATTTAAATTTTCGGTGTCAATGTTAGTTTTTTCCTGAAGAATTGGTTGCG
TTGTTTTGTCTCTGTCGATCTATCTGAGTGTACGGTTAATAAATCAATGGAATTCTTTTG
TAAAAAAAAAAAAAAAAA

Homology of Contig U35_23721 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33370.1	466	3e-62	protein\|3-ketoacyl-CoA synthase precursor, putative, expressed
Brachypodium v1_2	Bradi3g28560.1	474	2e-66
Arabidopsis v10	None