barSeed - Barley Seed Development Database

Probe CUST_20263_PI390587928

Source Contig U35_11750

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20263_PI390587928	Hv_44K_v2	GCAAGTATGTCCACTATGAGCTTGATCAAACACCAGATATAGCTCCAATGATGGCTGGCA	841	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.818	0.885	2.035	2.116	0.787	0.778
Raw	23.102	38.405	78.087	131.827	17.768	18.286

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59094.3	1238	2e-24	963 - 1022	100	60 / 60	minus	ABC12917
MLOC	MLOC_59094.2	2769	2e-24	1382 - 1441	100	60 / 60	minus	ABC12917
MLOC	MLOC_59094.1	2868	2e-24	1432 - 1491	100	60 / 60	minus	ABC12917
JLOC1	JLOC1_38434.2	2809	8e-25	1358 - 1417	100	60 / 60	plus
JLOC1	JLOC1_38434.1	2809	8e-25	1358 - 1417	100	60 / 60	plus
Harvest21	ABC23736	912	3e-25	842 - 901	100	60 / 60	plus
Harvest35	U35_11750	912	3e-25	842 - 901	100	60 / 60	plus

Contig Sequence (912 bp)

>U35_11750 912 Hv_44K_v2
CGACGGAGCTCGGGGGCTCCGTGCCTGCCGCTGTAGCTCTCGCCCTCCGACGCATAGCTG
AGGACAGCGGCGGCGTGCAGATCGAGGAGGCCATGATTGGAGGCAAGCAGATGATGATGG
TCTGGGCCATCGACCGTAGCAAGCTCCTCAAAGAGCTACCGGAATCTGCCACATTGTTGT
CACCTCAACCTCCACCCATACCACAGGCGACATCGTCCGAGACCGACACTAACAGTGCAA
CCATACCAAGACCACCACCACATCAGCAGCAACAGCCGGATATGTGGGCGCACTCAATGC
CACCGATGTTCCCACGGCCCAGGGGCATGACAATGCCGGGGATGCAGAGGATGATGCCAG
GATTGATGCCACTTCAGCGCCCGTTCATGGCTCCAAGCTCAGGGCCTAGTCCTACCAAGC
AGAACCAGAGGACCGAGGAGGAGGACCTGAAGGACCTCGAGGTTCTGCTTAGTAAGAAGA
CATATAAGGAGAAGCAGAACACAAAAACTGGGGAGGAGCTGCTAGATCTCATTCACCGGC
CAACGGCAAAAGAGACGGCTGTTGCAGCAAAGTTCAAAACAAAGGGTGGTTCCCAGCTGA
AGGAGTATTGCACCAATTTAACTAAAGAAGATTGCAGACGCCAATCTGGTTCTTTTGTTT
CCTGTGCTAAGGTTCACTTTCGCCGTATTATTGCTCTACATACTGATACAAATCTAGGAG
ATTGCTCTTTTCTGGACACCTGCCGCCACACTAAGGTTGGCCATAGAGGCATAAACCGTT
TTATGTTAATCTCTTCCTGTGCACCTGTTTTATCTTACATGCATTCTGCAATTGTAGACT
TGCAAGTATGTCCACTATGAGCTTGATCAAACACCAGATATAGCTCCAATGATGGCTGGC
ACCCTTGCTCCT

Homology of Contig U35_11750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g45110.1	707	2e-120	protein\|MT-A70 domain containing protein, expressed
Brachypodium v1_2	Bradi3g51437.1	699	1e-131
Arabidopsis v10	AT4G10760.1	685	8e-62	\| Symbols: EMB1706, MTA \| mRNAadenosine methylase \| chr4:6619947-6623312 REVERSE LENGTH=685