barSeed - Barley Seed Development Database

Probe CUST_20262_PI390587928

Source Contig U35_11751

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20262_PI390587928	Hv_44K_v2	GCTATTTCGTGTGAATTTGGAACATGCCACGTTGTTCCATTCTTAAAAGGGCAGCCTGTG	553	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.247	1.315	2.052	1.138	0.434	0.430
Raw	32.543	50.029	70.706	59.907	7.570	8.467

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365434	2460	2e-24	655 - 714	100	60 / 60	plus	None
JLOC1	JLOC1_48089.1	2006	8e-25	179 - 238	100	60 / 60	plus
Harvest21	ABC24617	627	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_11751	627	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (627 bp)

>U35_11751 627 Hv_44K_v2
GGCCGCCTCCGGCGGCCCCCCTCTCGCCGCCGCCAGCGAGATGACGCCGGTCTACCGCGC
GCCGCGGGAGGCCGACTTCGCGCGCTTCCCCGACTCCGCCCCCATCGTCATCGACAACGG
CGCCTCCACCTTCCGCATCGGGTGGGCTGGCGAGGCGGAGCCGCGCGTCTCCTTCCGCAA
CATCGTGCAGAGGCCGCGCCACCGCAGCTCTGGTGAAACTGTGACAGTTGTCGGAGACAC
TGATCCAGCTCTAATGAAGTACTTTGACTGCACACGGACATCAATTCGCTCAGCATTTGA
TGATGATGTCGTCTATCAGTTCGAGTACATGGAATATATTCTCGATTATGCTTTTGACCG
ATTAGGTGCCACATCAGAGGTGGGCCATCCCATTCTTATGACAGAGTGTGAGTGCAATCC
ATCCTTTTCTCGAGCACGAATGTCTGAACTTCTTTTCGAGACATATGGTGTGCCATCCGT
TGCTTTTGGTATCGATGATGTATTTAGTTACAAGTACAATCAGAAGCTTGGAAACTGTGG
AGAAGATGGGTTGGCTATTTCGTGTGAATTTGGAACATGCCACGTTGTTCCATTCTTAAA
AGGGCAGCCTGTGCTGGGGGCATGCTG

Homology of Contig U35_11751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	AT3G12380.2	730	2e-82	\| Symbols: ARP5 \| actin-related protein 5 \| chr3:3938309-3941785 REVERSE LENGTH=730