barSeed - Barley Seed Development Database

Probe CUST_20261_PI390587928

Source Contig U35_11753

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20261_PI390587928	Hv_44K_v2	CTGTGTACAGAAGTTCTTGTTTGATGGGGAGGTTGACAAAATCGCAACATATTTGAAAAA	249	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355914	1984	3e-21	615 - 674	97	58 / 60	plus	ABC42743
MLOC	MLOC_53077.2	1849	3e-21	466 - 525	97	58 / 60	plus	ABC42743
MLOC	MLOC_53077.1	2210	3e-21	662 - 721	97	58 / 60	plus	ABC42743
JLOC1	JLOC1_34063.1	2415	2e-21	797 - 856	97	58 / 60	plus
Harvest21	ABC22729	308	1e-24	250 - 308	100	59 / 59	plus
Harvest35	U35_11753	309	3e-25	250 - 309	100	60 / 60	plus

Contig Sequence (309 bp)

>U35_11753 309 Hv_44K_v2
AATACTGTCTTTGGAGGGTGTGACTATAGAGGAAACCAGTGCTTTATTCATTTTGACATC
ATTGTCGTCATGGATGTGTAAGCCGGGCTACGCTTCGTTGCCGCTGCCATATGCCAGAGC
TGGCAATGAACTTCTGGACCTTATTCAGACAGCGTCTTCAAGACTGCCTATCTCATCAAA
TGAACTATTTATCATGCTCGACGAAGCAAGTGAGAACACATTTCTTTGTACCAACGCAGC
CGATGCTGCCTGTGTACAGAAGTTCTTGTTTGATGGGGAGGTTGACAAAATCGCAACATA
TTTGAAAAA

Homology of Contig U35_11753 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None