barSeed - Barley Seed Development Database

Probe CUST_20260_PI390587928

Source Contig U35_11754

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20260_PI390587928	Hv_44K_v2	GGAGAATTGTGTTTCAGAACAACGACACGAAGGTTCAGACCTACCATATCGATGGATATG	648	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.159	1.842	2.365	1.313	0.288	0.338
Raw	127.738	328.476	349.407	324.891	24.572	30.745

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375045	2061	3e-22	1436 - 1494	98	59 / 60	plus	ABC21006 ABC22470
MLOC	MLOC_53085.1	880	3e-22	155 - 213	98	59 / 60	plus	ABC21006 ABC22470
JLOC1	JLOC1_34070.3	2925	1e-22	1272 - 1330	98	59 / 60	plus
JLOC1	JLOC1_34070.2	3153	1e-22	1293 - 1351	98	59 / 60	plus
JLOC1	JLOC1_34070.1	3205	1e-22	1552 - 1610	98	59 / 60	plus
Harvest21	ABC28478	709	3e-25	650 - 709	100	60 / 60	plus
Harvest35	U35_11754	708	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (708 bp)

>U35_11754 708 Hv_44K_v2
GCGCTTCCGAGTCCACAATGTGGGAGTCTCGACGAGCTTGAACCTGAGGATCCAGGGCCA
CAACATGGCCATGGTGGAGACAGAGGGCTCGTACACGATGAAGCAGAATTTCACCAACCT
CGACATCCATGTGGGGCAGTCCTACTCCTTTCTGGTCACCATGGACCAGAATGCAAGCAG
TGACTATTACATCGTGGCCAGCCCTCGGTTCGTGAACGAGTCGCTCTGGACCAGGGTTAC
CGGTGTTGCAATTCTTCACTACTCGAATTCAAAGGGCAAGGCATCTGGTCCGCTTCCTGA
CCCACCGAATGATGAGTATGACAAAAGTTTCTCCATGAACCAGGCACGGTCAATCAGGAT
GAACGTGACCACTGGTGCTGCTCGTCCGAATCCTCAAGGATCATTTCACTATGGGCAAAT
CAACGTGACCCAAGTGTACAAGTTGAGGAATATGCCCCCTGTTACCATCAATGGCAAAAA
GCGGACGACACTGAACGGTATCTCCTATTCACCGCCTGCTACTCCATTGAGGCTTGCAGA
TCTCTACGAAAAGAAAGAAGTCTACACACTCGACTTCCCAATGATGCCATCTGATGGACC
GCCGGTGATCGGCTCTTCTGTCATCAACTCGACGTACAAGAACTTCATGGAGAATTGTGT
TTCAGAACAACGACACGAAGGTTCAGACCTACCATATCGATGGATATG

Homology of Contig U35_11754 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01490.1	594	2e-135	protein\|monocopper oxidase, putative, expressed
Brachypodium v1_2	Bradi1g52200.1	593	4e-141
Arabidopsis v10	AT4G12420.1	587	4e-106	\| Symbols: SKU5 \| Cupredoxin superfamily protein \| chr4:7349941-7352868 REVERSE LENGTH=587