barSeed - Barley Seed Development Database

Probe CUST_20259_PI390587928

Source Contig U35_11755

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20259_PI390587928	Hv_44K_v2	AGCATAGCTCTCGGGACGGACGAAGCCTGCGCCAAGTTCAGGAAGGTGGTCTCTCTCCTC	274	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.401	0.857	1.476	2.153	1.218	1.146
Raw	3.358	15.375	25.796	57.195	11.618	11.962

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354776	2036	2e-24	682 - 741	100	60 / 60	plus	None
MLOC	AK369358	2570	2e-24	490 - 549	100	60 / 60	plus	None
MLOC	MLOC_77258.3	1685	2e-24	316 - 375	100	60 / 60	plus	None
MLOC	MLOC_77258.2	1594	3e-21	575 - 634	97	58 / 60	plus	None
MLOC	MLOC_77258.1	1734	3e-21	599 - 658	97	58 / 60	plus	None
JLOC1	JLOC1_51522.2	2025	2e-21	570 - 629	97	58 / 60	plus
JLOC1	JLOC1_51522.1	2022	2e-21	570 - 629	97	58 / 60	plus
Harvest21	ABC24799	541	6e-22	305 - 364	97	58 / 60	plus
Harvest35	U35_11755	406	3e-25	275 - 334	100	60 / 60	plus
Harvest35	U35_12101	542	6e-22	305 - 364	97	58 / 60	plus

Contig Sequence (406 bp)

>U35_11755 406 Hv_44K_v2
CCCTTGGCTCCTTCCTTCACACCTTCCGCTAAACCGGTCGCCGCTGGTGCGTGGGGGGCC
GATCGTCGTCCGTCGTCCGTCGCTTCCGAGCCCGTGGCCCCGGGTTCATCGCGCGCCGCC
CCGAGATCTGCCGCGGCGGGAGCTGCCGAGTAGCCGACGTGCCGGTGAGCTTCTCGAAAT
GGAGGAAGTGGAGGAGGCCAACAGGATGGCCGTGGAGAGCTGCCACAGAGTGCTCGGCTT
GCTCACCCAGACCCAGGGCCCGGAGCAGCTCCGGAGCATAGCTCTCGGGACGGACGAAGC
CTGCGCCAAGTTCAGGAAGGTGGTCTCTCTCCTCGGGCACGAGCCCTCCGGAGGAACCAC
CCATCCTAGAGCCAAGGTTGTCAGCAGGAGGCAGACCCCCGGGTTC

Homology of Contig U35_11755 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None