barSeed - Barley Seed Development Database

Probe CUST_20255_PI390587928

Source Contig U35_23730

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20255_PI390587928	Hv_44K_v2	TCAGCCCGCCGGCGACTCTGGCACGCTGACGACCCGGCAGATCGTGGCGAGGCGGCTTGG	403	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368579	1218	2e-24	416 - 475	100	60 / 60	plus	ABC06188 ABC06191 ABC11924
MLOC	MLOC_46554.1	679	7e-23	622 - 678	100	57 / 57	minus	None
Harvest21	ABC20992	463	3e-25	404 - 463	100	60 / 60	plus
Harvest35	U35_23730	463	3e-25	404 - 463	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_23730 463 Hv_44K_v2
CTCGCCTCACACGACTCCCTCCCTCCCTCCCTCCCTGCTCCTTCTCCCCCCGCCAATCCG
GCGATCCCCCACCCACCTGATCGCCCCGCGCACCGCGCAGCCCGAGCCCGGCCCCCTCCC
CGCGCCGCCTCGCAATGCCGGGCCTCGCCGCCGCCGAGCAGGACGCCGTCTCGCTGGTGC
GCCGCGTCGCCCGGGCCCTCAACCGCCGGATCTCCGACCTCGTCGCCCTCCTCTTCCGCC
ACAAGAGCGCGGGGTCCTTGGGCGCCGTCGCGGGCTTCGCCATCGCCGTCGTCTTCGCGT
GGAAGTTCCTGCGCTCCTCCTCGCCCGCGCGGCCCCGCCGCCCTGCCGCCCCCAAGCGGC
CCTCGCCCGCCGGCTCCGCGGCGCCTGCACCCGACGACCCGGCTCAGCCCGCCGGCGACT
CTGGCACGCTGACGACCCGGCAGATCGTGGCGAGGCGGCTTGG

Homology of Contig U35_23730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None