barSeed - Barley Seed Development Database

Probe CUST_20252_PI390587928

Source Contig U35_23733

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20252_PI390587928	Hv_44K_v2	AGAGAATTAGCTAGCAATTTGCCAGAATGTGAGGAGATTGGAGCACGCAAAGCTGAACCT	1036	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372528	2624	2e-24	1164 - 1223	100	60 / 60	plus	None
MLOC	MLOC_19352.2	2635	2e-24	535 - 594	100	60 / 60	minus	ABC24951
MLOC	MLOC_19352.1	1657	2e-24	535 - 594	100	60 / 60	minus	None
MLOC	MLOC_19352.3	2944	2e-24	535 - 594	100	60 / 60	minus	ABC24951
JLOC1	JLOC1_13424.3	3802	8e-25	2201 - 2260	100	60 / 60	plus
JLOC1	JLOC1_13424.2	2594	8e-25	993 - 1052	100	60 / 60	plus
JLOC1	JLOC1_13424.1	2657	8e-25	1056 - 1115	100	60 / 60	plus
Harvest21	ABC20896	1135	3e-25	1037 - 1096	100	60 / 60	plus
Harvest35	U35_23733	1135	3e-25	1037 - 1096	100	60 / 60	plus

Contig Sequence (1135 bp)

>U35_23733 1135 Hv_44K_v2
GCAGCCACGGAGCGGGAAAGGTGACTTCTTGGCTTCTTCCCCTCTTCCTCTTCCTCTTCC
TCTTCTACCTTGGGCATTCGGTGGCCTTTCCACTGTTTTTTTCTTTTTCTTCCTCAACCT
CCTCCGTCTCGAGCTGCGTTCCTCTCCAGATTACTCTCTTCAGGCGTTTGTTCCTAGTAG
AGATCATTAAGTCGATACAGAAACTCTGGATTCTGGACCTGGTGTTACGACAGACAAGAC
ATCTGTAGTGTAGCAGTCATATCAGTTTGGTGGTAGCTGGTAGATAGCTACAGCCTGGAA
ATATTGTGCTGTGGGTGATGTCCTTGGTCTTTCTTGTTTGATGGCAAGTGCAAACACAGG
CGCGTTTCGCCTTGTGAGGTGCCCAAAGTGTCTTAACATTCTACCAGAACCTGCAAATGT
TTCTGTCTACCAGTGCGGTGGATGCAACACCACTCTTAGAGCTAAAATCCGTGCCAGTGA
TGCACAAAATGTGGCCACCAAACAAGTTCAGCAAGATTCCCGGGATTACTCTGTTGTTCC
CTCTGAAACTGTGAGCAATGGGGTGTCGACAAAACAAGTTCGGCAAGACTCTGGTAATTA
CTCTGTTGTTACCTCTGTGAGCAATGGGGTGTCTCCCCAAAGCAAGGAACTGGGTTCTAT
TGGTGCTGCTGCGGATGATTCCATCACTCTTGGTGCTTCAAGCAGCGAGATGGAGCAAGA
GGGCAATGGCACCGGAAGCAGTGAGAAGGGTGATATTATGTCAGATGAGGAGAATGTTAT
GGAGGTTCCAAATACTGAGAGCAGCCAAGACAACAATTCTGGTGACGATGACACCAATGG
AGAAATAGAAGATCTTGCTGCCCTTATACAACCCAGTGGCAGTGGGAATGGCACACAGAT
AGTAGATTCTGACAAAGAAGAGAACAACACGGTAGAGCAAAGCGCAGAGAATTCAGAGGA
TTGCAAAATAAACGAAGATGGTGATAGGGAAAGCAGCCTGAATACCTCAGAGCATAACAT
GCCTTCATCCGAGGAAAGAGAATTAGCTAGCAATTTGCCAGAATGTGAGGAGATTGGAGC
ACGCAAAGCTGAACCTGCGGCAAGCAAGAGAAGCAAGCTGGTAAGGGTGCAATCT

Homology of Contig U35_23733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g21640.2	646	3e-59	protein\|expressed protein
Brachypodium v1_2	Bradi1g63270.1	645	3e-82
Arabidopsis v10	None