- Probe CUST_20249_PI390587928
- Source Contig U35_23736
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20249_PI390587928 | Hv_44K_v2 | TTGCCCTCGCTAGGCAAGATACACCCATGCCAAAGGACAATTTTGGAAAGGGTGAATTAA | 601 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.256 | 1.725 | 1.389 | 0.665 | 0.728 | 0.531 |
| Raw | 198.324 | 177.693 | 167.302 | 110.080 | 47.487 | 38.910 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK367694 | 4415 | 2e-24 | 2192 - 2251 | 100 | 60 / 60 | plus | ABC12241 |
| MLOC | MLOC_55628.2 | 3948 | 2e-24 | 2187 - 2246 | 100 | 60 / 60 | minus | ABC12241 |
| MLOC | MLOC_55628.3 | 2417 | 2e-24 | 651 - 710 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_55628.1 | 4470 | 2e-24 | 2704 - 2763 | 100 | 60 / 60 | minus | ABC12241 |
| JLOC1 | JLOC1_35910.1 | 4049 | 8e-25 | 1701 - 1760 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51765 | 598 | 3e-25 | 538 - 597 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23736 | 662 | 3e-25 | 602 - 661 | 100 | 60 / 60 | plus |
Contig Sequence (662 bp)
>U35_23736 662 Hv_44K_v2 ATTATCTTACTTGCGAATGCAAAGAAGAATGCTATTTATGCTGTGCATGTTGAGTATGGC TCAGACCCTGCTTCTACCCGCTTGGATTATATCGCAGATTTTACAGTTGCAATGCCAATT TTAAGTCTTACTGGCACACATGAAAGCCAACCTGATGGTGAGCAGGTAGTTCAAGTCTAT TGTGTCCAAACAATGGCCATCCAGCAGTATGGGCTGGAGTTATCACTTTGTTCGCCTCCT ACATCTGATACTATCGCACTTGGAAGAGACCCTGCTATTTCACGTGTTTATGATACACCT CTGGAAGTGGTAGGAGCAGAGTCATCCACGGGAACTAGCTTTACAGATTCGAGTAAACAA TCAACTTTTGATCAGACTTCAGAGTTTGATCTTAAGCCATCAGCTCCACCACTTGCATAC ACAGAAGGTGATGGTTCTGCGCATCTTCCGTCTGCCCCTCTTGCATCAAACACTGATCTT ACTGGATCAGGACCATCAGTAGGCAACCGTGACAAAGACCAATCAGTTTTTGATTATTCG ACAAGCAGAATCACTGAGCCAGTTGCCTTGACTAGGCAAGATACACCCATGCCAAAACCA CTTGCCCTCGCTAGGCAAGATACACCCATGCCAAAGGACAATTTTGGAAAGGGTGAATTA AG
Homology of Contig U35_23736 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g49090.2 | 1118 | 1e-99 | protein|WD domain, G-beta repeat domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g56517.1 | 1375 | 6e-109 | |
| Arabidopsis v10 | None |