- Probe CUST_20234_PI390587928
- Source Contig U35_2270
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_20234_PI390587928 | Hv_44K_v2 | ATATGAAGCTCAAGGAGAGTGTCAAAGCTTACAGTAATTGGCCTACCTTTCCGCAAATAT | 588 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.434 | 0.678 | 1.167 | 1.972 | 0.927 | 1.250 |
| Raw | 197.584 | 494.488 | 726.113 | 2041.972 | 321.440 | 473.553 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_36621.1 | 1200 | 2e-24 | 605 - 664 | 100 | 60 / 60 | plus | ABC05694 |
| MLOC | MLOC_36621.2 | 1093 | 2e-24 | 457 - 516 | 100 | 60 / 60 | minus | ABC05694 |
| JLOC1 | JLOC1_23604.2 | 1379 | 8e-25 | 614 - 673 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_23604.1 | 1370 | 8e-25 | 605 - 664 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05695 | 651 | 3e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC05694 | 1218 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus | ABC05694 |
| Harvest21 | ABC38269 | 563 | 4e-24 | 417 - 476 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_2270 | 651 | 3e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2269 | 1218 | 3e-25 | 556 - 615 | 100 | 60 / 60 | plus |
Contig Sequence (651 bp)
>U35_2270 651 Hv_44K_v2 CAGGACCACGTTCGTGCGGTATACTCACCGAACAGCACATCGTAGTAGATTGGAGTCGTA CCGTCCTAGAAGGCAGTGCCGCCGCCGTCGCCGCCACCGCCACCCCCTATCCCTCCGCAT CCCACGAGCGTCGCCGCCCACAGCGCCCCTGCTGTCTCCACTCCGCACGCAATCTCTCTC CACTCGGTTTTAAGTCGGTGCAGGGGAACATGGCGAGGCTGGTGTCGTCTTCCCTCGTCA GGGGGCTCGTGCGGTCGTGCCGCGCGTCCAGCACGGCGGCTGTGTCACGACCAGCTTTCC AACAGTTCATGACCTATTCATCAGGAATCAGTGGTGATTCTAACGTGAATGGGGGCACAA GTACAACTCGAGTAACTGCTGATTCTGATACACATCAAGATTTCCAGCCTACAAGCAAAG ATTCTGACATGTCTTTGCAAGACATCGTTGCTCAGGATATCAAGGAGAATCCAGTCATCA TTTACATGAAGGGTCATCCTCAAGCTCCCAGGTGTGGATTCAGTGCACTGGCAGTTAAGG TCCTCCAGCAATATGGCGTCTCTATCACTAGTAGAGATATTCTGACTAATATGAAGCTCA AGGAGAGTGTCAAAGCTTACAGTAATTGGCCTACCTTTCCGCAAATATTTA
Homology of Contig U35_2270 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g34620.7 | 169 | 3e-59 | protein|OsGrx_S15.1 - glutaredoxin subgroup II, expressed |
| Brachypodium v1_2 | Bradi1g08020.1 | 181 | 4e-68 | |
| Arabidopsis v10 | None |