barSeed - Barley Seed Development Database

Probe CUST_20229_PI390587928

Source Contig U35_2275

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20229_PI390587928	Hv_44K_v2	AGGAAAGAGTTCAAATAGCAAACTTTCTCTGTCCTGGTAACTATGCAGTTTCTGGTGGTG	908	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.916	1.062	1.969	2.007	0.900	0.878
Raw	224.832	380.812	660.369	1074.269	166.215	178.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55594.1	1536	2e-24	891 - 950	100	60 / 60	plus	ABC05709
JLOC1	JLOC1_35879.1	1683	8e-25	904 - 963	100	60 / 60	plus
Harvest21	ABC05709	1636	3e-25	909 - 968	100	60 / 60	plus	ABC05709
Harvest35	U35_2275	1629	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (1629 bp)

>U35_2275 1629 Hv_44K_v2
CCCGGGCTGCAGGAATTCGGACGAGGGTTGAAACAGCCCCAGAGTACCCCCACCCCAGCT
AACACAAGCGGCCTTTGCTAGAGGCCCACACAGCCTCTCGCGTATCGCTCTCGCTCTCGC
TCCTCACCTCGTGAGCTCCGCCTCCGCCTCCGCCTCCCCCCGCCTCGCTACTCGCCAGCA
AGCCATCCACCCAAGCTACAAAGTGCGCGGCCGCACTCGCATGCTCCTCCGCCCTCCTCG
CTTCCCACGCCTCTCTCCTCGCCGCCTCCGCTCGGAATCTCCGATGGCTTCCACGCTCGC
CTTGCTCAGGCCGTCGGCGCCGAGCCCGGCGACGACCCTGAGGGCGCCGTTCAGATCTCG
GGTCTCCACTAGAGTGTCTGTCGGATCGGCAGTGGCAGCAGGCGCCGACACGCTCTTCGC
CGACTACAAACCCACCACCGCGTTCCTTTTCCCCGGCCAGGGTGCTCAGGCTGTTGGAAT
GGGTAAAGAAGCTCTTAATGTTCGAGCAGCTGCAGAACTATTTGATAAGGCAAATGATAT
ACTTGGCTACGACTTGCTGAATCTTTGCATCGATGGACCAAAAGAAAAGCTGAACTCAAC
AGTGATCAGTCAGCCAGCTATATATGTTACCAGCCTTGCAGCTGTAGAAGTGTTACGTGC
ACGGGAAGACGGTCAATCTGTAATTAACTCTGTAGATGTCACATGTGGTCTCAGCTTGGG
AGAATATACCGCGCTTGCATTTGCTGGTGCCTTTAGCTTTGAGGATGGTCTGAAGCTTGT
CAAGCTTAGAGGAGAAGCCATGCAGGATGCCTCAGATGCTGCCAATAGTGCGATGGCTAG
TGTGATTGGTCTAGATTCAGAAAAGGTGCAACAATTATGCGATGCTGCAAATGAGGACGT
GGATGAAAAGGAAAGAGTTCAAATAGCAAACTTTCTCTGTCCTGGTAACTATGCAGTTTC
TGGTGGTGTGAAGGGTATTGAAGCAGTTGAAGCCAAAGCAAAGTCTTTCAAGGCCAGAAT
GACGGTTCGCCTAGCTGTTGCTGGTGCTTTCCACACAAGCTTCATGCAACCTGCTGTCTC
AAGATTGGAATCTGCGTTGGCTGCTACCGAGATTAGATCACCGAGAATCCCAGTAATCTC
CAATGTTGATGCACAGCCCCACTCAGATCCTGACACAATCAAGAAGATCTTGGCACAACA
GGTAACCTCTCCTGTGCAATGGGAGACTACTGTGACGACTCTTTTGGGTAAAGGCCTTGA
GAAGAGCTATGAACTCGGACCTGGAAAGGTTATAGCAGGAATCATTAAACGGATCAACAA
AGGTGCCAGCATCGAGAACATTGGTGCATGAGACATCGGATCGCCGATATTATAGGGGCA
AATAATAAAGCTAACGGGAGCTGCTTAGATTTAAGCAACTGTCCTGAATGTACTACAGGG
CACGAGGTCTGGCAATTTCCTGTCATTTGTGAGGAACATAGATAGTGTTGTACAATTATG
TTTCATTGGCTAGAGCTAGGTTTCTCGGCGGTTCAGATTGCCCTCCATATTGTGAGGATC
AGAATGAATTTCGCTTATGGTTATGACTTACAAGTAATTTTATCCCCATGGCCAAAAAAA
AAAAAAAAA

Homology of Contig U35_2275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g18590.1	388	0.0	protein\|malonyl CoA-acyl carrier protein transacylase, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi1g65140.2	386	0.0
Arabidopsis v10	AT2G30200.1	393	2e-176	catalytics;transferases;[acyl-carrier-protein] S-malonyltransferases;binding \| chr2:12883162-12885482 REVERSE LENGTH=393