barSeed - Barley Seed Development Database

Probe CUST_20224_PI390587928

Source Contig U35_2280

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20224_PI390587928	Hv_44K_v2	CCATCTTCTTCGTGTAATCCGCAGCTGAAAGCGAAACACAGCAATGTAATCCGGTTTTTT	1515	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.808	2.966	1.067	0.823	0.349	0.332
Raw	3208.943	3751.010	1229.320	1503.574	224.470	228.412

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69020.4	1564	2e-24	1498 - 1557	100	60 / 60	plus	ABC04928 ABC06870
MLOC	MLOC_69021.1	4857	2e-24	3363 - 3422	100	60 / 60	plus	ABC06870
JLOC1	JLOC1_45715.1	1888	8e-25	1595 - 1654	100	60 / 60	plus
Harvest21	ABC06870	1614	3e-25	1516 - 1575	100	60 / 60	plus	ABC06870
Harvest35	U35_2280	1612	3e-25	1516 - 1575	100	60 / 60	plus

Contig Sequence (1612 bp)

>U35_2280 1612 Hv_44K_v2
CGCGTACCCGAAGCTCCTCCATAGTCTTTGCGCTGCCGCCCCTTCGCACCAGTCACCACC
GTCCACCACCGGCACCTCGCTGCTAATCCTTGGCGCGGGTCCGGAGGGGGGAATTTCGCC
GAGCAGGATGAACGCATTGGCGGCCACCAGCCGGAACTTCAAGCAGGCGGCCAAGCTGCT
CGGCCTCGACTCCAAGCTCGAGAAGAGCTTGCTCATCCCCTTCAGGGAGATCAAGGTTGA
ATGCACAATCCCGAAAGATGACGGGACATTAGCATCCTATGTTGGGTTTAGGGTGCAGCA
TGACAATGCCAGGGGTCCTATGAAGGGTGGAATCAGATACCACCATGAGGTTGATCCTGA
CGAGGTCAATGCTTTGGCACAACTCATGACATGGAAAACGGCAGTGGCTAATATTCCGTA
TGGAGGAGCTAAAGGTGGCATAGGATGCAGTCCTGGAGACCTGAGCATATCGGAGCTCGA
GCGGCTTACCCGAGTTTTCACCCAGAAAATTCATGACTTAATTGGCATCCACACCGATGT
TCCAGCTCCCGATATGGGCACCAACGCACAGACAATGGCATGGATTCTGGATGAGTACTC
AAAGTTCCATGGTTACTCACCTGCTGTGGTGACAGGAAAGCCTGTGGACCTTGGAGGATC
ACTGGGAAGAGATGCAGCTACTGGAAGGGGAGTTTTGTTTGCCACTGAAGCCCTACTTGC
AGAGCATGGCAAAGGCATTGCAGGCCAGCGTTTTGTAATCCAGGGATTTGGTAATGTTGG
CTCCTGGGCTGCTCAACTGATCACTGAAGCTGGTGGCAAGGTGATCGCCATCAGCGATGT
CACAGGGGCTGTCAAGAACACCAATGGCATTGACATAGCCAAGCTAATGAAGCACTCCGC
GGAGAACCGCGGGATCAAGGGCTTTGACGGTGGTGACGCCGTCGACCCGACCTCGCTCCT
CACCGAAGAATGCGACGTCCTCATCCCGGCAGCGCTGGGAGGGGTCATAAACAAGGACAA
TGCTGATGCCATCAAAGCGAAGTACATCATCGAGGCTGCGAACCACCCGACAGACCCCGA
GGCCGACGAGATCCTGGCGAAGAAGGGGGTGCTGATCCTGCCGGACATCCTGGCCAACTC
GGGCGGCGTGACGGTGAGCTACTTCGAGTGGGTGCAGAACATCCAGGGGTTCATGTGGGA
CGAGGAGAAGGTGAACCGGGAGCTCAAGACGTACATGACCCGCGCCTTCCGGGACACCAA
GGAGATGTGCCGCTCCCACCACTGCGACCTCCGCATGGGCGCCTTCACCCTCGGCGTCAA
CCGCGTCGCCCGCGCCACCGTCCTCCGCGGCTGGGAGGCCTGATCGCCGGCCGGCATCCT
GCAATGCCCTTGCTCTCTCGCCGTCTCCATGGGCATCCCATCGAAGTCACGACTCAACAA
AAAAGTTGAATAAACGAGCCCGTGTGTTGTCTCATAAGCTCTGATCTCTTGGAGACCGAC
AGAACAGTAGCATCACCATCTTCTTCGTGTAATCCGCAGCTGAAAGCGAAACACAGCAAT
GTAATCCGGTTTTTTTCTTGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_2280 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g58040.2	412	protein\|glutamate dehydrogenase protein, putative, expressed
Brachypodium v1_2	Bradi1g05680.2	412
Arabidopsis v10	AT5G18170.1	411	\| Symbols: GDH1 \| glutamate dehydrogenase 1 \| chr5:6006172-6008248 FORWARD LENGTH=411