barSeed - Barley Seed Development Database

Probe CUST_20205_PI390587928

Source Contig U35_17000

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20205_PI390587928	Hv_44K_v2	TATGATCTATGGTGTGGACAGTTAAATTGTGGCCGGTTGATGAATAAAAAAGGTTGGAAC	614	GeneList: lightgreen MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.017	0.021	0.390	2.442	3.867	7.099
Raw	55.410	131.958	2235.640	20806.667	11937.543	23817.167

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34493.1	923	2e-24	773 - 832	100	60 / 60	plus	ABC06061
JLOC1	JLOC1_22250.1	825	8e-25	720 - 779	100	60 / 60	plus
Harvest21	ABC06061	695	3e-25	615 - 674	100	60 / 60	plus	ABC06061
Harvest35	U35_17000	695	3e-25	615 - 674	100	60 / 60	plus

Contig Sequence (695 bp)

>U35_17000 695 Hv_44K_v2
GATCTTGAATAACTATTCTTGCCCACCAGGCCAAGAGATTGAACCAACGACCAATAAACT
AGTATCAACAATGGCATCCGACCATCGTCGCTTCGTCCTCTCCGGCGCCGTCTTGCTCTC
GGTCCTCGCCGTCGCCGCCGCCACCCTGGAGAGCGTCAAGGACGAGTGCCAACCAGGGGT
GGACTTCCCGCATAACCCGTTAGCCACCTGCCACACCTACGTGATAAAACGGGTCTGCGG
CCGCGGTCCCAGCCGGCCCATGCTGGTGAAGGAGCGGTGCTGCCGGGAGCTGGCGGCCGT
CCCGGATCACTGCCGGTGCGAGGCGCTGCGCATCCTCATGGACGGGGTGCGCACGCCGGA
GGGCCGCGTGGTTGAGGGACGGCTCGGTGACAGGCGTGACTGCCCGAGGGAGGAGCAGAG
GGCGTTCGCCGCCACGCTTGTCACGGCGGCGGAGTGCAACCTATCGTCCGTCCAGGAGCC
GGGAGTACGCTTGGTGCTACTGGCAGATGGATGACGATCGAAATGCGCCAAGGTAATGAA
GCGGAGTACTGTATACAGAATAAAAGTACTCGAGTGAAAACAAACTCATAAATAAACCTT
GTGAGATGTATGCGTATGATCTATGGTGTGGACAGTTAAATTGTGGCCGGTTGATGAATA
AAAAAGGTTGGAACAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17000 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None