barSeed - Barley Seed Development Database

Probe CUST_20199_PI390587928

Source Contig U35_17006

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20199_PI390587928	Hv_44K_v2	TGGTCTCATATTGGTGCCATCATGTTAGATTTAACACTTACCTATATCTACAAATGCTCC	1584	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62586.1	5497	2e-24	2866 - 2925	100	60 / 60	plus	ABC44926
JLOC1	JLOC1_40968.2	3910	8e-25	3503 - 3562	100	60 / 60	minus
JLOC1	JLOC1_40968.1	3852	8e-25	3445 - 3504	100	60 / 60	minus
JLOC1	JLOC1_40967.1	3420	8e-25	2842 - 2901	100	60 / 60	plus
Harvest21	ABC07072	660	3e-25	25 - 84	100	60 / 60	minus
Harvest21	ABC07070	1650	1e-24	1585 - 1643	100	59 / 59	plus
Harvest35	U35_17006	1668	3e-25	1585 - 1644	100	60 / 60	plus

Contig Sequence (1668 bp)

>U35_17006 1668 Hv_44K_v2
GCAGCTCCACCTTCAAACCGTAGGAAGAGCCCAGCTAAAAAAGACGATGGTTCATCAACT
TCTGATGGGAAATCTGGAATAAGTGGCGGTGCTGTAGCGGGCATTATCATATCTTTGCTG
GTCGTCGGAGCAATTATTGCATTTTTTGTGATAAAAAGGAAGCGCAAATCTAAGAGGGAG
GAGCACTTTGAACAGCACCAGCCATTCACTTCATTCCCTTCAAACGAAGTTAAAGATACG
AAGCCTTTCGAAGAGTCAACCGCAATAGATGTGGACTCTTTGGCTTCCCCTGCTTCAGTT
GGTCTGAAGCCACCTGCCAAGATTGAACGCAACAAGTCATTCGATGACGATGATGACTTC
TCGAGCAAACCCGTCGCAAGGAAAAGCAATACAAAACCTATAAAGGCAATTGTTTATTCA
GTTGCAGATCTACAAATAGCAACAGATAGCTTCAGCATGGACAACCTTGTTGGAGAGGGT
ACTTTTGGACGTGTCTACAGGTCACAGTTTAACGATGGAAAGGTTTTGGCCGTGAAGAAA
CTGGATTGTACCGTAATACCATTCCAATCATCTGATGACTTTGTTGAACTGGTCTCAAAC
ATTTCGATTTTGCACCATCCGAATCTCAATGAGCTTGTGGGCTACTGCATGGAACATGGA
CAACACTTGCTTGTGTATGATTTCCACAGGAATGGATCACTTCATGATCTACTTCATCTT
TCAGATGAATACAGCAAGCCACTTAGCTGGAACACTCGCATTAAGATCGCACTAGGATCT
GCCCGTGCACTGGAGTATCTTCATGAAGTATGTTCTCCATCCGTCGTTCACAAGAATTTC
AAGTCATCCAACATTCTGCTCGACTCAGAATACAATCCACACCTTTCAGATGCTGGACTC
GCTAGCTTTATTCCTGATGCTGAGTTTCAGACAGCAGAACAGAGTGCCGGGTGCACTGCC
CCAGAGGTGGACATGACTGGCCAGTACACTATGAAGAGCGATGTCTACAGCTTTGGGGTT
GTCATGCTAGAGCTTTTGACTGGACGCAAACCATTCGACAGCTCCAAGCCTAGGTCAGAG
CAGTCACTTGTGCGGTGGGCGTCTCCCCAGCTCCACGACATCGATGCGTTGGACAGGATG
GTCGATCCTGCGCTCAAGGGTCTGTACCCTGCCAAGTCTCTTTCCCGATTCGCCGACGTG
CTTGCCTTGTGTGTCCAGGCTGAGCCGGAATTCAGGCCACCGATGTCGGAGGTGGTGCAG
GCGCTGGTCCGTCTCGTGCAGAGGGCCAACATGACGAAGAAAATGCTCGATGGCGACGCT
TCCCGGCGAGGCGATGACCAGGATCAGGATTTCATATGATGGAAGCACAACCACTCTAAT
ATATCCCCTGATATCGCAGCATCTGAGATTGTATTCGTTTATTTCTTCTAGCGCCTAGCC
TGGCCGAGAGAAGAGTGGAAGAAGAGAAGAGAACAGAAATATTGTCCTGTTCCGTCAGTA
CATATCACACAGGTTTCGCTTGATTTATTATACCCAAGTATTAGTAGTGTTGTTTGGCTG
TGTCATGTCCACAAATCAGCGCCCTGGTCTCATATTGGTGCCATCATGTTAGATTTAACA
CTTACCTATATCTACAAATGCTCCAAATAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g08550.2	622	0.0	protein\|STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed
Brachypodium v1_2	Bradi1g72430.1	721	0.0
Arabidopsis v10	AT1G53730.2	720	1e-170	\| Symbols: SRF6 \| STRUBBELIG-receptor family 6 \| chr1:20061771-20065475 FORWARD LENGTH=720