barSeed - Barley Seed Development Database

Probe CUST_20197_PI390587928

Source Contig U35_17008

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20197_PI390587928	Hv_44K_v2	CTTTGACCAGCACGTATAATAGCTCTCTGTCGACGCACCGTCACGTTCCTAGTTAAAAAA	1390	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.686	1.743	1.063	0.808	0.404	0.418
Raw	874.305	1416.355	753.720	897.630	159.729	177.788

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13392.1	1671	2e-21	1492 - 1545	100	54 / 54	plus
Harvest21	ABC06821	1461	3e-25	1391 - 1450	100	60 / 60	plus	ABC06821
Harvest35	U35_17008	1461	3e-25	1391 - 1450	100	60 / 60	plus

Contig Sequence (1461 bp)

>U35_17008 1461 Hv_44K_v2
CAACCTACCTCCGTCCGCTTGAGCTCGAGCGCAACCGCCGAAACCGAGGACGACTCTTCT
CCGCACCGCCGCCGCCGCCGCCTCCTCTTCGGCCGACCGGAGAACCGGTGCTTAGGTTCA
AAAGGGGTTAACCTTCCTGTCCATGAATATGTATTTTGAAGGCTACGGTTACCGTGGAAG
TACTTTTGAGCAGACCTATCGCTGCTACCCTGCATCTTTTATTGACAAGCCACAGCTTGA
ATCTGGTGACAAAATTATCATGCCACCTTCGGCACTTGATCGTCTTGCGTCTCTGCATAT
TGAGTATCCTATGCTATTTGAAGTCCGCAACACAGGAGCAGAACGTACTTCACACTGTGG
TGTCCTAGAGTTCATTGCAGAAGAAGGCATGATCTACATGCCATACTGGATGATGCAAAA
TCTTCTTTTGCAAGAAGGAGATATGGTGTTTATAAAAAATGCCAACCTCCCAAAGGGCAC
ATATGTGAAGCTGCAGCCTCATACAACTGACTTCTTGGACATTTCAAATCCCAAAGCGAT
CTTGGAAAAAACTTTGCGGAACTACTCTTGTCTAACCACTGGTGACAGCATTATGGTGGC
ATATAATAACAAGAAGTACTACATTGATATAGTTGAAACAAAGCCTTCCAGTGCTATAAG
TATAATTGAGACTGATTGTGAGGTTGACTTCGCCCCACCACTTGACTATAAAGAACCTGA
GCGGCCAAAACCTACTGCTCCTCCGAGCGCTGATCCTGCTGCAGAGGCTCAAGTTGAGGA
GGAACCTAAGTTCAGCCCCTTCACTGGTCCTGGTAGGCGCCTGGATGGCAAGCCTGCTAA
AGATCTGGATGCGTCATCCTCTTCGCCTGCAAAGCGACAAGCTAATGCAACCAACAGTGT
TCAGCCATCAGCAGCCTCCACCTCACAGAGCACCGCGCCTCGTAAAACCACGGGAAAACT
TGTCTTTGGCTCTGGCGGAAGCCAGTCATCAAAAGGAACAGAAAAGGTACCCGAAAAGGA
TGCAAAGGAGGACCCGAAGAAAGAGGAGCCGAAATTTTCAGCATTCACGGGAAAGAAGTA
CTCCTTGAAGGGCTGAATGTCCAGAGTATGTATTTATCACTTATCAGCACTTCCTATCAC
AAACATCATCAGGGAGAAGAGTTCAGTCAGCTATTGTTTAGTTTCCTGATCCCTTTTGGG
AGCTGGGGCATCTTTTGGTGGAGTATCAATGCTTCTTTCCTGTCAACTGATCCTTATGTC
AGCCACCGTGGGTCAGTTTGACTGATTTGTAAAAAGTATTTTAATGTCTGGTCATGGATT
TTTAGTGAGTTCCTACACATTTTGCGTTTGTATGCGCTATTGGTTTGGACTTCAAGGGCA
GTTTTAATGGCTTTGACCAGCACGTATAATAGCTCTCTGTCGACGCACCGTCACGTTCCT
AGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_17008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g08480.1	316	2e-179	protein\|ubiquitin fusion degradation protein, putative, expressed
Brachypodium v1_2	Bradi3g06080.1	316	0.0
Arabidopsis v10	AT2G21270.3	340	3e-141	\| Symbols: UFD1 \| ubiquitin fusion degradation 1 \| chr2:9107841-9110012 FORWARD LENGTH=340