barSeed - Barley Seed Development Database

Probe CUST_20189_PI390587928

Source Contig U35_17011

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20189_PI390587928	Hv_44K_v2	CTGGTGTGATAGTCAATAAACATAATAATGTGTGTATATCCTTTGGAAATTTTGGGTGCG	2176	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.392	0.443	1.078	2.025	1.174	1.680
Raw	70.195	131.189	272.256	789.429	161.748	253.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56095.2	2231	2e-24	81 - 140	100	60 / 60	minus	ABC06687 ABC49684
MLOC	MLOC_56095.1	2318	2e-24	81 - 140	100	60 / 60	minus	ABC06687 ABC49684
MLOC	MLOC_56095.3	2374	2e-24	81 - 140	100	60 / 60	minus	ABC06687 ABC49684
MLOC	MLOC_56095.5	2285	2e-24	1 - 60	100	60 / 60	minus	ABC06687 ABC49684
MLOC	MLOC_56095.4	2535	2e-24	81 - 140	100	60 / 60	minus	ABC06687 ABC49684
JLOC1	JLOC1_36259.9	2464	8e-25	2247 - 2306	100	60 / 60	plus
JLOC1	JLOC1_36259.8	2343	8e-25	2126 - 2185	100	60 / 60	plus
JLOC1	JLOC1_36259.7	2386	8e-25	2169 - 2228	100	60 / 60	plus
JLOC1	JLOC1_36259.6	2442	8e-25	2225 - 2284	100	60 / 60	plus
JLOC1	JLOC1_36259.5	2299	8e-25	2082 - 2141	100	60 / 60	plus
JLOC1	JLOC1_36259.4	2431	8e-25	2214 - 2273	100	60 / 60	plus
JLOC1	JLOC1_36259.3	2348	8e-25	2131 - 2190	100	60 / 60	plus
JLOC1	JLOC1_36259.2	2346	8e-25	2129 - 2188	100	60 / 60	plus
JLOC1	JLOC1_36259.1	2194	8e-25	1977 - 2036	100	60 / 60	plus
Harvest21	ABC06687	2362	3e-25	2177 - 2236	100	60 / 60	plus	ABC06687
Harvest35	U35_17011	2362	3e-25	2177 - 2236	100	60 / 60	plus

Contig Sequence (2362 bp)

>U35_17011 2362 Hv_44K_v2
GGCTGCAGGAATTAGGCACGAGGCACCACACCACACCACACCCGTCTCGTCCTAGCTCCC
TGCTCCTCCCGCTCGCCATTCCTCCGCCCCGCCCCAGCTCTGCTCGTCCTGGACCGCGGG
TCGCCAGGAAGGGCCTTCAGGAACGGGATTTTTTTACCTAGGAGCCAATTTGGGTTTTTA
ATCGCAGATTGGATTGGGTTCAGGGATGAGGGGAGAGGAGGGGCTGCATCACCTGGCCCG
GTTCCCATCTCTCTGAACTTAGATGGATGCATCTGTGAAGTCCAAGAAGGTTAGCTCTTG
TGGAAACACCGGTCATAGCCGCTGCGGCGAAGTTCATAAACCTGTCCTGCCGTGTCGCAT
GCGGGATCGCTGCTTAAATAGAAATAATCCCTTCTCGCTTCAGGTTTGGTTTGCATTTCC
TTTTAAGTATAAAGGCAACTGTATTTGGCATGGCATTTGAGTAAGCATCAGAAACTCAAA
AGCAAAGTTTGTCAGAAATATTATACCTTTATTGGTGTCAATACTTCCATAGAGAAGATG
GTGGATGATTTGTTTTATGAGGGCAACACTGATCACAGCATCAGCTCTGAGGACGAAGAG
ACACTTGTCAGGAGTTGTAGTAATCTCAGCGTAAGCTTTGGCTATCATTGCAATTCTTAT
CAGAGTTTTCCTCTTGAAAGTGATGAGCATGACACCTCTCCCCAGATGAGGTTTGAAAGT
AATGCCATGATGAAGTCACGAAATGGCTCATTTACTTGTTTATCTGGTGCCGCAATTAGT
GCAAATTTCACACTGGCCAATACGAATATTTGCAAGGGTCTTATTGGGGAAGAAATTTTA
CCAGAACTAGATTCTCCAAATTCTTTCAGAAAAATCGTCTCTTCTCCATCTATGTCAAGG
TTAGACTTGCTGTCCACCTCACAAGGCAGCCCTGCATCAACTGAGAGCTCCATATTTGAA
ATCAGTAAAAATCTTTGGAGGTCCAGCGCTCCAACAACTGTATCATCCAATTTTCTGACT
GGTACCGAGGTAAAGATGGCTGGTGGAGCTGCTGGAGAGGATAGAGTCCAAGCTGTGTGC
TCTGAGAAAAATGGATGGTTGATTTGTGGAATTTATGACGGATTTAATGGACGAGATGCA
GCTGATTTTCTGGCAGTAACTCTGTATGATAACATAGTATATTACCTATACTTGTTAGAG
TGCCGTATCAAGCAACAAGATGGCCTATACAGCTCATCAGAGGACTCCCTGAATGGTGTT
AAAAGTGAGTTAACATTAGCCATGGAAATTGCAGAGAATGAAGATGTAAAACTTTCTGAA
AGTTTTCGAGCTGGTGTGCTGAATTGCCTCACTTCTGCTGTTGAGCAAGCTGAGAATGAT
TTCTTATGCATGGTTGAACAGGATATGGATGATAGACCAGATTTAGTTTCAGTTGGGTCT
TGTGTCCTGGTTGTGCTTCTTCAGGGAACAGATTTGTGCATTCTGAATCTTGGGGATAGT
AGAGCTGTGCTTGCTTCCATGCCATATGCAGAAATGGATACAGTTAAAGCTACTCAATTG
ACAGAGATCCACTCACTTGAAAATCCATTGGAATACCAAAAACTATTAGCTGACCATCCT
AATGACTCTAAAGTTGTGATGGGTAACAAAGTAAAAGGGAAGCTAAAGGTCACTCGTGCT
TTTGGAGTTGGCTACCTTAAACAGAAAAAGTTCAATGATGCACTCATGGGAATTCTCCGA
GTTCGTAATTTGTGCAGTCCGCCTTACGTATATACAAATCCACACACACTCAGTCACAAG
GTTACGGAGGACGATCTGTTTGTTGTGCTTGGCAGTGATGGCTTATTTGATTTCTTCAGT
AACGATGAAGTTGTTCAGTTGGTTTATCAATTTATGCATGATAATCCAACTGGCGATCCT
GCGAAATATCTTATCGAGCAAGTTGTACATAAAGCTGCCAAAGAAGCAGCTTTAACAGCT
GAACAGTTGATGAGGATACCTGTTGGGAGCAGGAGAAAGTACCACGACGACGTGACTGTC
ATAGTTATCATCCTTGGGAACGCACGAAGGACGGTGAGCGCATCAACTTCGATATGAAAG
ACGTGCCGATCTCAAGAAGAGGCTGCCAGCCGCATAAAATTTTGTGGGTGTTAGGACATG
GATCTTTTTCAGGGTTCTGGTGTGATAGTCAATAAACATAATAATGTGTGTATATCCTTT
GGAAATTTTGGGTGCGAACAGATATCTTTTGTTAAGTCAAAAAAAAAAAAAAGACTTGTT
CCGCTTAATTCTGCACGCGGTAACGAAAAAAAATCACCGCTCTTACTCCGCATTGCGATT
CATGACCTACCATAATCTATGG

Homology of Contig U35_17011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g33080.2	521	0.0	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi5g08830.1	520	0.0
Arabidopsis v10	AT3G16560.1	493	2e-158	Protein phosphatase 2C family protein \| chr3:5636051-5637702 REVERSE LENGTH=493