barSeed - Barley Seed Development Database

Probe CUST_20172_PI390587928

Source Contig U35_2080

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_20172_PI390587928	Hv_44K_v2	GATGTGTGCAGGTTTCTTTGTCTATCCTTTTTGTGCATGAAGGTTTCTTTGTCTAAAAAA	2125	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.398	1.899	1.150	0.700	0.163	0.170
Raw	114.742	146.769	75.759	72.838	4.699	5.703

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_34769.2	4008	5e-22	3909 - 3963	100	55 / 55	plus
JLOC1	JLOC1_34769.1	3848	5e-22	3749 - 3803	100	55 / 55	plus
Harvest35	U35_2080	2196	3e-25	2126 - 2185	100	60 / 60	plus

Contig Sequence (2196 bp)

>U35_2080 2196 Hv_44K_v2
GGACTATTTCTGATGAACTGCCTCAGGAATCTTCAAAACTGGAGCAAGATGGTACTCCAA
CTACTGCTATTTGCAGTGGTGCAACTCTGGTTGATAATGGCGAGGCTAATCAAGGACCAG
TGTCTCCAAAAGGACCAGCGTCACCAAAAGGACCAGCGTCACCAAAAGGACCAGCGTCAC
CAAAAGAGAAGCCTGAACAGCCTGAAGACACAAAAGGTGCTGATCAGTTGAAATCTGCTA
ATGACGAAGGTGTAGAACCTGTTGATGCAAAGCCCAAGAAGTCATCTGATGTTGATTCAA
TGAAAGACCTGAAGCTCAAACACTGCAAGTCTGTGGCAACTCCACACTCTATTGTTGATG
TTGACAAAGAAGCTCATGTAATATCTGGAGAGTTATCTGCAGACAAGAAGGTAGTCAATG
GAGTGGCTGATAATGTACCAAAGCGTGCTGATACCGCACCTGATATAGTTAAGCCAAAAC
GAGGCCGGCCTCCTGGACCAAAGTCAGCAGAGAAAAAGGCTGCTAGAAATAACCAATCTT
CAGATTTAGATTTGAAGAAGACTGAGGAGGCTATGGATTCAACTGGGAAGTTAACAAAGC
GATCAGCTAAGGATGATATCAAATCTGCCACAAAAAAGACTGGTGAAGGAGAATCATCAA
AGAAGACTGCTAGAAATAACCAATCTTCAGATTTAGATTTGAAGAAGACTGAGGAGGCTA
TGGATTCAACTGGGAAGTTAACAAAGCGATCAGCTAAGGATGATATCAAATCTTCCACAA
AGAAGACTGGTGAAGGAGAATCATCAAAGAAGCAGCAAAAGCCCAGTTTGAAACAGCACA
AGGAAGAAATTCTATCTGAGGAGGACACTGCCAAGGATATGACTCTAAAGGAAATGGTCT
CTCCAAAGTCTCTGACCAAGGGGTCAGGTAGAACCAAGGGTCAAAGTGGGGACAATAATG
TTGTGAAGAGGAAGCGTGAACAAGATACTGAAGAGCCTCCTCGCTCAAGGAAGGACAAAG
GTCTGGATGGTAGCCTAGTTGGTTCAAGGATCAAAGTATGGTGGCCAGATGATGAGATGT
TCTACAAAGGTGTTGTTGACTCATTTGATAACCATTCCAAAAGGCATAAGGTTGCATATG
ATGATGGAGATGTAGAGGTACTGTTGCTCAGGGATGAAAAATGGGATTTCACCAGTGAGG
AAGAAAGCAAAACTCCTGATGTACCATCTGTTATACCCCGTGGCAGAAAAGGGAGAGGAA
TCACGCTGCTGCCAGTGAAGGAAGAAAAAATAGAAACACCTAAAAGTGACGGAGGGGAGC
TTCCAAAGAAAAGGGGCCGTCCGAAAGGTTGGCGCCCCAACAATGGCACCCCAAGCAAAT
CAAAGGGGAAAACTGCTATGAAGGATGCCAAGGGGACACCTAAAACTCCCAGCGAGATTA
AGAAGGAAGTCAAGGAAAAAGCCACCACTGGATCAGCTAACAAGATGAAGGATGATTTAG
CTAAAGACAGCAGCAACCAGAAGCTTAAGGAGGTTGGGAGCAAGGGCAAGGATGGAAGCA
AATCTGGCGATGGATCTGTGAAGGGTAGGCCTGGCCGGAAGCCAAAAAGCGCTCCAGTGG
TGGGTAGTGGATCTGGATCTGTTCAAGAGAAGCAGGAGGAGAAAGAAGCGCAGGAGGAGG
AGAAAGAAGAGGCGGAGGCATCTGAAATGGAGCAGGAGGCATCTGGCAAGGGGGCGTCTT
CAACTGGAAAGAAGCGCAGAAGGAAGGCTTAAGCTTAAACCAACCGTGAACTTCCCTCGT
AAATGGGCTCGCTCTCATCATGGCACCGTTGTATGGATTGTAACTCCTTGGTCGTTGTTT
TTACCTTACCTATTGAATTTGTCTGTCTGCTGACTGGGCATCATCGTCTGTGTCTGTTGT
AGTTATTAGGGGGGCTGTGGCAGGAAACATCTGCAGTAGCTGTAATGTTAGTCGTGGCTT
TATGTTGTGGGATGCATGATGTGATGTTGCAGAGCCTCAAGGGAACATCTAGTTTGTGTC
GAATGTTGTTGTAGCCAGCTTATTCATCTTCTATTTATATAGGCTATATTTCATCATCAA
AAAAAAAAAAAAAAATCTTGTAGCAGATGTGTGCAGGTTTCTTTGTCTATCCTTTTTGTG
CATGAAGGTTTCTTTGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_2080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39920.1	756	5e-98	protein\|AT hook motif family protein, expressed
Brachypodium v1_2	Bradi3g48580.1	838	3e-169
Arabidopsis v10	None